Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06920 and RR42_RS06925 are separated by 256 nucleotides RR42_RS06925 and RR42_RS06930 are separated by 251 nucleotides RR42_RS06930 and RR42_RS06935 are separated by 210 nucleotides RR42_RS06935 and RR42_RS06940 overlap by 4 nucleotides
RR42_RS06920: RR42_RS06920 - hypothetical protein, at 1,488,709 to 1,488,963
_RS06920
RR42_RS06925: RR42_RS06925 - hypothetical protein, at 1,489,220 to 1,489,402
_RS06925
RR42_RS06930: RR42_RS06930 - hypothetical protein, at 1,489,654 to 1,489,980
_RS06930
RR42_RS06935: RR42_RS06935 - hypothetical protein, at 1,490,191 to 1,490,961
_RS06935
RR42_RS06940: RR42_RS06940 - DNA methyltransferase, at 1,490,958 to 1,492,754
_RS06940
Position (kb) 1489
1490 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1488.697 kb on + strand at 1488.698 kb on - strand at 1488.739 kb on + strand, within RR42_RS06920 at 1488.739 kb on + strand, within RR42_RS06920 at 1488.739 kb on + strand, within RR42_RS06920 at 1488.740 kb on - strand, within RR42_RS06920 at 1488.740 kb on - strand, within RR42_RS06920 at 1488.740 kb on - strand, within RR42_RS06920 at 1488.740 kb on - strand, within RR42_RS06920 at 1488.740 kb on - strand, within RR42_RS06920 at 1488.740 kb on - strand, within RR42_RS06920 at 1488.740 kb on - strand, within RR42_RS06920 at 1488.740 kb on - strand, within RR42_RS06920 at 1488.741 kb on + strand, within RR42_RS06920 at 1488.885 kb on + strand, within RR42_RS06920 at 1488.886 kb on - strand, within RR42_RS06920 at 1488.886 kb on - strand, within RR42_RS06920 at 1488.996 kb on - strand at 1489.141 kb on - strand at 1489.213 kb on + strand at 1489.213 kb on + strand at 1489.214 kb on - strand at 1489.349 kb on + strand, within RR42_RS06925 at 1489.417 kb on + strand at 1489.418 kb on - strand at 1489.446 kb on + strand at 1489.447 kb on - strand at 1489.501 kb on + strand at 1489.501 kb on + strand at 1489.501 kb on + strand at 1489.605 kb on + strand at 1489.716 kb on + strand, within RR42_RS06930 at 1489.717 kb on - strand, within RR42_RS06930 at 1489.873 kb on - strand, within RR42_RS06930 at 1490.004 kb on + strand at 1490.005 kb on - strand at 1490.076 kb on + strand at 1490.076 kb on + strand at 1490.076 kb on + strand at 1490.077 kb on - strand at 1490.079 kb on + strand at 1490.080 kb on - strand at 1490.080 kb on - strand at 1490.281 kb on + strand, within RR42_RS06935 at 1490.346 kb on - strand, within RR42_RS06935 at 1490.346 kb on - strand, within RR42_RS06935 at 1490.566 kb on + strand, within RR42_RS06935 at 1490.566 kb on + strand, within RR42_RS06935 at 1490.635 kb on + strand, within RR42_RS06935 at 1490.758 kb on + strand, within RR42_RS06935 at 1490.894 kb on + strand at 1490.933 kb on + strand at 1490.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 1,488,697 + +1.3 1,488,698 - +0.7 1,488,739 + RR42_RS06920 0.12 +2.3 1,488,739 + RR42_RS06920 0.12 -1.1 1,488,739 + RR42_RS06920 0.12 +0.6 1,488,740 - RR42_RS06920 0.12 -0.1 1,488,740 - RR42_RS06920 0.12 -3.3 1,488,740 - RR42_RS06920 0.12 -0.2 1,488,740 - RR42_RS06920 0.12 +0.8 1,488,740 - RR42_RS06920 0.12 -0.8 1,488,740 - RR42_RS06920 0.12 +0.7 1,488,740 - RR42_RS06920 0.12 +2.6 1,488,740 - RR42_RS06920 0.12 +0.2 1,488,741 + RR42_RS06920 0.13 +0.8 1,488,885 + RR42_RS06920 0.69 -0.7 1,488,886 - RR42_RS06920 0.69 +1.0 1,488,886 - RR42_RS06920 0.69 +0.4 1,488,996 - -3.9 1,489,141 - -0.4 1,489,213 + +0.4 1,489,213 + +1.0 1,489,214 - +1.6 1,489,349 + RR42_RS06925 0.70 -0.6 1,489,417 + -0.3 1,489,418 - +0.4 1,489,446 + +0.4 1,489,447 - -0.6 1,489,501 + -0.6 1,489,501 + +1.2 1,489,501 + +0.4 1,489,605 + +1.1 1,489,716 + RR42_RS06930 0.19 -1.6 1,489,717 - RR42_RS06930 0.19 +0.4 1,489,873 - RR42_RS06930 0.67 -0.8 1,490,004 + -0.3 1,490,005 - +1.6 1,490,076 + -1.4 1,490,076 + +0.0 1,490,076 + -2.3 1,490,077 - +0.9 1,490,079 + -0.1 1,490,080 - -0.0 1,490,080 - +0.6 1,490,281 + RR42_RS06935 0.12 -0.1 1,490,346 - RR42_RS06935 0.20 +1.7 1,490,346 - RR42_RS06935 0.20 -0.1 1,490,566 + RR42_RS06935 0.49 +1.0 1,490,566 + RR42_RS06935 0.49 -0.6 1,490,635 + RR42_RS06935 0.58 +0.6 1,490,758 + RR42_RS06935 0.74 -0.6 1,490,894 + -0.2 1,490,933 + -0.8 1,490,974 - +0.9
Or see this region's nucleotide sequence