Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05465

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS05460 and RR42_RS05465 are separated by 371 nucleotidesRR42_RS05465 and RR42_RS05470 are separated by 104 nucleotidesRR42_RS05470 and RR42_RS05475 are separated by 218 nucleotides RR42_RS05460: RR42_RS05460 - peptidase M23, at 1,204,476 to 1,204,979 _RS05460 RR42_RS05465: RR42_RS05465 - 2-isopropylmalate synthase, at 1,205,351 to 1,206,889 _RS05465 RR42_RS05470: RR42_RS05470 - lipoprotein, at 1,206,994 to 1,207,524 _RS05470 RR42_RS05475: RR42_RS05475 - ABC transporter permease, at 1,207,743 to 1,208,987 _RS05475 Position (kb) 1205 1206 1207Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1204.421 kb on + strandat 1204.421 kb on + strandat 1204.421 kb on + strandat 1204.421 kb on + strandat 1204.421 kb on + strandat 1204.422 kb on - strandat 1204.433 kb on + strandat 1204.434 kb on - strandat 1204.434 kb on - strandat 1204.438 kb on + strandat 1204.439 kb on - strandat 1204.439 kb on - strandat 1204.439 kb on - strandat 1204.459 kb on + strandat 1204.460 kb on - strandat 1204.460 kb on - strandat 1204.623 kb on + strand, within RR42_RS05460at 1204.623 kb on + strand, within RR42_RS05460at 1204.623 kb on + strand, within RR42_RS05460at 1204.623 kb on + strand, within RR42_RS05460at 1204.824 kb on - strand, within RR42_RS05460at 1204.887 kb on + strand, within RR42_RS05460at 1204.887 kb on + strand, within RR42_RS05460at 1204.888 kb on - strand, within RR42_RS05460at 1204.941 kb on + strandat 1204.942 kb on - strandat 1205.044 kb on - strandat 1205.054 kb on + strandat 1205.055 kb on - strandat 1205.055 kb on - strandat 1205.079 kb on + strandat 1205.081 kb on + strandat 1205.130 kb on - strandat 1205.130 kb on - strandat 1205.139 kb on - strandat 1205.210 kb on + strandat 1205.210 kb on + strandat 1205.211 kb on - strandat 1205.267 kb on - strandat 1205.324 kb on + strandat 1205.590 kb on + strand, within RR42_RS05465at 1205.591 kb on - strand, within RR42_RS05465at 1205.641 kb on + strand, within RR42_RS05465at 1205.641 kb on + strand, within RR42_RS05465at 1205.641 kb on + strand, within RR42_RS05465at 1205.641 kb on + strand, within RR42_RS05465at 1205.642 kb on - strand, within RR42_RS05465at 1205.668 kb on + strand, within RR42_RS05465at 1205.668 kb on + strand, within RR42_RS05465at 1205.669 kb on - strand, within RR42_RS05465at 1205.840 kb on - strand, within RR42_RS05465at 1205.888 kb on + strand, within RR42_RS05465at 1205.888 kb on + strand, within RR42_RS05465at 1206.068 kb on - strand, within RR42_RS05465at 1206.113 kb on + strand, within RR42_RS05465at 1206.113 kb on + strand, within RR42_RS05465at 1206.139 kb on + strand, within RR42_RS05465at 1206.140 kb on - strand, within RR42_RS05465at 1206.281 kb on - strand, within RR42_RS05465at 1206.281 kb on - strand, within RR42_RS05465at 1206.281 kb on - strand, within RR42_RS05465at 1206.284 kb on + strand, within RR42_RS05465at 1206.284 kb on + strand, within RR42_RS05465at 1206.284 kb on + strand, within RR42_RS05465at 1206.285 kb on - strand, within RR42_RS05465at 1206.285 kb on - strand, within RR42_RS05465at 1206.698 kb on + strand, within RR42_RS05465at 1206.698 kb on + strand, within RR42_RS05465at 1206.827 kb on + strandat 1206.828 kb on - strandat 1206.828 kb on - strandat 1207.073 kb on + strand, within RR42_RS05470at 1207.118 kb on + strand, within RR42_RS05470at 1207.119 kb on - strand, within RR42_RS05470at 1207.127 kb on - strand, within RR42_RS05470at 1207.127 kb on - strand, within RR42_RS05470at 1207.127 kb on - strand, within RR42_RS05470at 1207.151 kb on + strand, within RR42_RS05470at 1207.151 kb on + strand, within RR42_RS05470at 1207.151 kb on + strand, within RR42_RS05470at 1207.151 kb on + strand, within RR42_RS05470at 1207.151 kb on + strand, within RR42_RS05470at 1207.152 kb on - strand, within RR42_RS05470at 1207.226 kb on + strand, within RR42_RS05470at 1207.227 kb on - strand, within RR42_RS05470at 1207.227 kb on - strand, within RR42_RS05470at 1207.227 kb on - strand, within RR42_RS05470at 1207.227 kb on - strand, within RR42_RS05470at 1207.295 kb on + strand, within RR42_RS05470at 1207.296 kb on - strand, within RR42_RS05470at 1207.325 kb on + strand, within RR42_RS05470at 1207.352 kb on - strand, within RR42_RS05470at 1207.358 kb on + strand, within RR42_RS05470at 1207.358 kb on + strand, within RR42_RS05470at 1207.359 kb on - strand, within RR42_RS05470at 1207.390 kb on + strand, within RR42_RS05470at 1207.391 kb on - strand, within RR42_RS05470at 1207.391 kb on - strand, within RR42_RS05470at 1207.411 kb on + strand, within RR42_RS05470at 1207.411 kb on + strand, within RR42_RS05470at 1207.480 kb on + strandat 1207.481 kb on - strandat 1207.554 kb on + strandat 1207.554 kb on + strandat 1207.554 kb on + strandat 1207.554 kb on + strandat 1207.555 kb on - strandat 1207.555 kb on - strandat 1207.555 kb on - strandat 1207.561 kb on + strandat 1207.561 kb on + strandat 1207.562 kb on - strandat 1207.569 kb on + strandat 1207.570 kb on - strandat 1207.694 kb on - strandat 1207.711 kb on + strandat 1207.711 kb on + strandat 1207.711 kb on + strandat 1207.711 kb on + strandat 1207.712 kb on - strandat 1207.712 kb on - strandat 1207.712 kb on - strandat 1207.712 kb on - strandat 1207.712 kb on - strandat 1207.712 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
remove
1,204,421 + -0.5
1,204,421 + +0.4
1,204,421 + -0.2
1,204,421 + -0.8
1,204,421 + +0.8
1,204,422 - -0.1
1,204,433 + -0.7
1,204,434 - -0.3
1,204,434 - +1.1
1,204,438 + -0.0
1,204,439 - -0.4
1,204,439 - -0.0
1,204,439 - -1.8
1,204,459 + +0.0
1,204,460 - -0.1
1,204,460 - -1.1
1,204,623 + RR42_RS05460 0.29 -0.3
1,204,623 + RR42_RS05460 0.29 -0.2
1,204,623 + RR42_RS05460 0.29 +0.7
1,204,623 + RR42_RS05460 0.29 +0.6
1,204,824 - RR42_RS05460 0.69 +0.4
1,204,887 + RR42_RS05460 0.82 -0.5
1,204,887 + RR42_RS05460 0.82 +2.1
1,204,888 - RR42_RS05460 0.82 -2.0
1,204,941 + -0.9
1,204,942 - +0.2
1,205,044 - -0.2
1,205,054 + +0.0
1,205,055 - -0.1
1,205,055 - +0.2
1,205,079 + +1.2
1,205,081 + -1.7
1,205,130 - -1.0
1,205,130 - -2.6
1,205,139 - -0.6
1,205,210 + +0.8
1,205,210 + +0.6
1,205,211 - -0.1
1,205,267 - -0.7
1,205,324 + +0.4
1,205,590 + RR42_RS05465 0.16 -1.1
1,205,591 - RR42_RS05465 0.16 -0.2
1,205,641 + RR42_RS05465 0.19 -0.5
1,205,641 + RR42_RS05465 0.19 -0.4
1,205,641 + RR42_RS05465 0.19 -0.4
1,205,641 + RR42_RS05465 0.19 +0.8
1,205,642 - RR42_RS05465 0.19 -1.3
1,205,668 + RR42_RS05465 0.21 +0.5
1,205,668 + RR42_RS05465 0.21 -1.5
1,205,669 - RR42_RS05465 0.21 -0.8
1,205,840 - RR42_RS05465 0.32 +0.1
1,205,888 + RR42_RS05465 0.35 -0.5
1,205,888 + RR42_RS05465 0.35 -0.8
1,206,068 - RR42_RS05465 0.47 -0.5
1,206,113 + RR42_RS05465 0.50 -0.9
1,206,113 + RR42_RS05465 0.50 -0.6
1,206,139 + RR42_RS05465 0.51 -0.6
1,206,140 - RR42_RS05465 0.51 -0.6
1,206,281 - RR42_RS05465 0.60 -1.8
1,206,281 - RR42_RS05465 0.60 -1.6
1,206,281 - RR42_RS05465 0.60 +0.4
1,206,284 + RR42_RS05465 0.61 -0.5
1,206,284 + RR42_RS05465 0.61 -0.6
1,206,284 + RR42_RS05465 0.61 -1.0
1,206,285 - RR42_RS05465 0.61 -0.8
1,206,285 - RR42_RS05465 0.61 -0.9
1,206,698 + RR42_RS05465 0.88 -2.7
1,206,698 + RR42_RS05465 0.88 -0.2
1,206,827 + -0.3
1,206,828 - -3.6
1,206,828 - +0.5
1,207,073 + RR42_RS05470 0.15 -0.5
1,207,118 + RR42_RS05470 0.23 -0.1
1,207,119 - RR42_RS05470 0.24 -0.0
1,207,127 - RR42_RS05470 0.25 -2.5
1,207,127 - RR42_RS05470 0.25 +0.1
1,207,127 - RR42_RS05470 0.25 -0.4
1,207,151 + RR42_RS05470 0.30 -0.7
1,207,151 + RR42_RS05470 0.30 -0.4
1,207,151 + RR42_RS05470 0.30 -2.9
1,207,151 + RR42_RS05470 0.30 +0.0
1,207,151 + RR42_RS05470 0.30 +0.2
1,207,152 - RR42_RS05470 0.30 -1.4
1,207,226 + RR42_RS05470 0.44 -2.8
1,207,227 - RR42_RS05470 0.44 +0.8
1,207,227 - RR42_RS05470 0.44 -2.6
1,207,227 - RR42_RS05470 0.44 +0.7
1,207,227 - RR42_RS05470 0.44 -1.0
1,207,295 + RR42_RS05470 0.57 +0.8
1,207,296 - RR42_RS05470 0.57 +0.1
1,207,325 + RR42_RS05470 0.62 -0.8
1,207,352 - RR42_RS05470 0.67 -0.8
1,207,358 + RR42_RS05470 0.69 +2.5
1,207,358 + RR42_RS05470 0.69 -1.2
1,207,359 - RR42_RS05470 0.69 -0.8
1,207,390 + RR42_RS05470 0.75 -0.1
1,207,391 - RR42_RS05470 0.75 -0.1
1,207,391 - RR42_RS05470 0.75 -1.1
1,207,411 + RR42_RS05470 0.79 -1.5
1,207,411 + RR42_RS05470 0.79 +0.9
1,207,480 + -0.0
1,207,481 - -1.1
1,207,554 + +0.1
1,207,554 + +0.4
1,207,554 + -0.8
1,207,554 + +0.0
1,207,555 - +0.4
1,207,555 - -0.8
1,207,555 - +1.8
1,207,561 + +0.8
1,207,561 + +0.8
1,207,562 - -1.8
1,207,569 + +1.1
1,207,570 - -0.8
1,207,694 - +0.2
1,207,711 + -0.5
1,207,711 + +0.2
1,207,711 + -2.4
1,207,711 + +0.6
1,207,712 - -0.4
1,207,712 - +0.8
1,207,712 - -1.5
1,207,712 - -0.4
1,207,712 - +1.2
1,207,712 - +0.6

Or see this region's nucleotide sequence