Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04580 and RR42_RS04585 are separated by 74 nucleotides RR42_RS04585 and RR42_RS04590 are separated by 109 nucleotides RR42_RS04590 and RR42_RS04595 are separated by 25 nucleotides
RR42_RS04580: RR42_RS04580 - Butyryl-CoA dehydrogenase (EC 1.3.8.1) <small>(from data)</small>, at 1,021,398 to 1,023,182
_RS04580
RR42_RS04585: RR42_RS04585 - amino acid dehydrogenase, at 1,023,257 to 1,024,561
_RS04585
RR42_RS04590: RR42_RS04590 - AsnC family transcriptional regulator, at 1,024,671 to 1,025,174
_RS04590
RR42_RS04595: RR42_RS04595 - deoxyribodipyrimidine photolyase, at 1,025,200 to 1,026,282
_RS04595
Position (kb) 1023
1024
1025 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1022.259 kb on + strand, within RR42_RS04580 at 1022.259 kb on + strand, within RR42_RS04580 at 1022.259 kb on + strand, within RR42_RS04580 at 1022.259 kb on + strand, within RR42_RS04580 at 1022.259 kb on + strand, within RR42_RS04580 at 1022.259 kb on + strand, within RR42_RS04580 at 1022.259 kb on + strand, within RR42_RS04580 at 1022.260 kb on - strand, within RR42_RS04580 at 1022.260 kb on - strand, within RR42_RS04580 at 1022.332 kb on - strand, within RR42_RS04580 at 1022.332 kb on - strand, within RR42_RS04580 at 1022.332 kb on - strand, within RR42_RS04580 at 1022.484 kb on + strand, within RR42_RS04580 at 1022.484 kb on + strand, within RR42_RS04580 at 1022.484 kb on + strand, within RR42_RS04580 at 1022.484 kb on + strand, within RR42_RS04580 at 1022.484 kb on + strand, within RR42_RS04580 at 1022.485 kb on - strand, within RR42_RS04580 at 1022.485 kb on - strand, within RR42_RS04580 at 1022.485 kb on - strand, within RR42_RS04580 at 1022.485 kb on - strand, within RR42_RS04580 at 1022.485 kb on - strand, within RR42_RS04580 at 1022.485 kb on - strand, within RR42_RS04580 at 1022.485 kb on - strand, within RR42_RS04580 at 1022.485 kb on - strand, within RR42_RS04580 at 1022.485 kb on - strand, within RR42_RS04580 at 1022.559 kb on + strand, within RR42_RS04580 at 1022.559 kb on + strand, within RR42_RS04580 at 1022.560 kb on - strand, within RR42_RS04580 at 1022.560 kb on - strand, within RR42_RS04580 at 1022.682 kb on + strand, within RR42_RS04580 at 1022.709 kb on + strand, within RR42_RS04580 at 1022.709 kb on + strand, within RR42_RS04580 at 1022.709 kb on + strand, within RR42_RS04580 at 1022.710 kb on - strand, within RR42_RS04580 at 1022.710 kb on - strand, within RR42_RS04580 at 1022.964 kb on + strand, within RR42_RS04580 at 1022.964 kb on + strand, within RR42_RS04580 at 1023.306 kb on + strand at 1023.306 kb on + strand at 1023.421 kb on + strand, within RR42_RS04585 at 1023.903 kb on + strand, within RR42_RS04585 at 1023.904 kb on - strand, within RR42_RS04585 at 1023.904 kb on - strand, within RR42_RS04585 at 1023.904 kb on - strand, within RR42_RS04585 at 1024.071 kb on + strand, within RR42_RS04585 at 1024.072 kb on - strand, within RR42_RS04585 at 1024.072 kb on - strand, within RR42_RS04585 at 1024.072 kb on - strand, within RR42_RS04585 at 1024.173 kb on + strand, within RR42_RS04585 at 1024.174 kb on - strand, within RR42_RS04585 at 1024.221 kb on + strand, within RR42_RS04585 at 1024.222 kb on - strand, within RR42_RS04585 at 1024.222 kb on - strand, within RR42_RS04585 at 1024.260 kb on + strand, within RR42_RS04585 at 1024.260 kb on + strand, within RR42_RS04585 at 1024.261 kb on - strand, within RR42_RS04585 at 1024.410 kb on + strand, within RR42_RS04585 at 1024.422 kb on - strand, within RR42_RS04585 at 1024.509 kb on + strand at 1024.532 kb on + strand at 1024.532 kb on + strand at 1024.533 kb on - strand at 1024.533 kb on - strand at 1024.533 kb on - strand at 1024.533 kb on - strand at 1024.562 kb on - strand at 1024.595 kb on + strand at 1024.596 kb on - strand at 1024.604 kb on + strand at 1024.605 kb on - strand at 1024.605 kb on - strand at 1024.611 kb on - strand at 1024.613 kb on - strand at 1024.615 kb on + strand at 1024.616 kb on - strand at 1024.666 kb on - strand at 1024.669 kb on + strand at 1024.694 kb on - strand at 1024.751 kb on + strand, within RR42_RS04590 at 1024.751 kb on + strand, within RR42_RS04590 at 1024.751 kb on + strand, within RR42_RS04590 at 1024.751 kb on + strand, within RR42_RS04590 at 1024.848 kb on + strand, within RR42_RS04590 at 1024.849 kb on - strand, within RR42_RS04590 at 1024.851 kb on + strand, within RR42_RS04590 at 1024.851 kb on + strand, within RR42_RS04590 at 1024.851 kb on + strand, within RR42_RS04590 at 1024.852 kb on - strand, within RR42_RS04590 at 1024.931 kb on + strand, within RR42_RS04590 at 1024.931 kb on + strand, within RR42_RS04590 at 1024.931 kb on + strand, within RR42_RS04590 at 1024.931 kb on + strand, within RR42_RS04590 at 1024.931 kb on + strand, within RR42_RS04590 at 1024.932 kb on - strand, within RR42_RS04590 at 1024.932 kb on - strand, within RR42_RS04590 at 1024.932 kb on - strand, within RR42_RS04590 at 1024.975 kb on + strand, within RR42_RS04590 at 1024.976 kb on - strand, within RR42_RS04590 at 1024.976 kb on - strand, within RR42_RS04590 at 1025.010 kb on + strand, within RR42_RS04590 at 1025.047 kb on - strand, within RR42_RS04590 at 1025.106 kb on + strand, within RR42_RS04590 at 1025.106 kb on + strand, within RR42_RS04590 at 1025.106 kb on + strand, within RR42_RS04590 at 1025.107 kb on - strand, within RR42_RS04590 at 1025.107 kb on - strand, within RR42_RS04590 at 1025.107 kb on - strand, within RR42_RS04590 at 1025.201 kb on + strand at 1025.201 kb on + strand at 1025.202 kb on - strand at 1025.369 kb on + strand, within RR42_RS04595 at 1025.370 kb on - strand, within RR42_RS04595 at 1025.432 kb on + strand, within RR42_RS04595 at 1025.432 kb on + strand, within RR42_RS04595 at 1025.432 kb on + strand, within RR42_RS04595 at 1025.432 kb on + strand, within RR42_RS04595 at 1025.432 kb on + strand, within RR42_RS04595 at 1025.433 kb on - strand, within RR42_RS04595 at 1025.433 kb on - strand, within RR42_RS04595 at 1025.433 kb on - strand, within RR42_RS04595 at 1025.433 kb on - strand, within RR42_RS04595 at 1025.433 kb on - strand, within RR42_RS04595 at 1025.490 kb on + strand, within RR42_RS04595 at 1025.490 kb on + strand, within RR42_RS04595 at 1025.491 kb on - strand, within RR42_RS04595 at 1025.492 kb on + strand, within RR42_RS04595 at 1025.492 kb on + strand, within RR42_RS04595 at 1025.492 kb on + strand, within RR42_RS04595 at 1025.492 kb on + strand, within RR42_RS04595 at 1025.492 kb on + strand, within RR42_RS04595 at 1025.492 kb on + strand, within RR42_RS04595 at 1025.493 kb on - strand, within RR42_RS04595 at 1025.493 kb on - strand, within RR42_RS04595
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 1,022,259 + RR42_RS04580 0.48 +0.5 1,022,259 + RR42_RS04580 0.48 +1.6 1,022,259 + RR42_RS04580 0.48 +2.1 1,022,259 + RR42_RS04580 0.48 +0.6 1,022,259 + RR42_RS04580 0.48 +0.5 1,022,259 + RR42_RS04580 0.48 +0.7 1,022,259 + RR42_RS04580 0.48 -0.4 1,022,260 - RR42_RS04580 0.48 -2.1 1,022,260 - RR42_RS04580 0.48 -0.3 1,022,332 - RR42_RS04580 0.52 -0.7 1,022,332 - RR42_RS04580 0.52 +0.4 1,022,332 - RR42_RS04580 0.52 -1.0 1,022,484 + RR42_RS04580 0.61 +1.6 1,022,484 + RR42_RS04580 0.61 +0.3 1,022,484 + RR42_RS04580 0.61 +1.9 1,022,484 + RR42_RS04580 0.61 -0.1 1,022,484 + RR42_RS04580 0.61 +0.7 1,022,485 - RR42_RS04580 0.61 +1.2 1,022,485 - RR42_RS04580 0.61 +0.4 1,022,485 - RR42_RS04580 0.61 -0.5 1,022,485 - RR42_RS04580 0.61 -0.5 1,022,485 - RR42_RS04580 0.61 +0.4 1,022,485 - RR42_RS04580 0.61 -0.2 1,022,485 - RR42_RS04580 0.61 +1.4 1,022,485 - RR42_RS04580 0.61 +1.0 1,022,485 - RR42_RS04580 0.61 +0.6 1,022,559 + RR42_RS04580 0.65 +1.1 1,022,559 + RR42_RS04580 0.65 -0.2 1,022,560 - RR42_RS04580 0.65 -1.7 1,022,560 - RR42_RS04580 0.65 -1.3 1,022,682 + RR42_RS04580 0.72 +1.1 1,022,709 + RR42_RS04580 0.73 -0.1 1,022,709 + RR42_RS04580 0.73 -0.2 1,022,709 + RR42_RS04580 0.73 +2.7 1,022,710 - RR42_RS04580 0.74 +0.8 1,022,710 - RR42_RS04580 0.74 +0.4 1,022,964 + RR42_RS04580 0.88 +0.1 1,022,964 + RR42_RS04580 0.88 +0.4 1,023,306 + -3.0 1,023,306 + -0.3 1,023,421 + RR42_RS04585 0.13 -2.3 1,023,903 + RR42_RS04585 0.50 -1.9 1,023,904 - RR42_RS04585 0.50 +0.3 1,023,904 - RR42_RS04585 0.50 +1.7 1,023,904 - RR42_RS04585 0.50 -2.1 1,024,071 + RR42_RS04585 0.62 +1.9 1,024,072 - RR42_RS04585 0.62 -0.6 1,024,072 - RR42_RS04585 0.62 -0.9 1,024,072 - RR42_RS04585 0.62 -1.1 1,024,173 + RR42_RS04585 0.70 -0.0 1,024,174 - RR42_RS04585 0.70 +2.3 1,024,221 + RR42_RS04585 0.74 +1.3 1,024,222 - RR42_RS04585 0.74 +0.4 1,024,222 - RR42_RS04585 0.74 -0.1 1,024,260 + RR42_RS04585 0.77 +0.4 1,024,260 + RR42_RS04585 0.77 +0.3 1,024,261 - RR42_RS04585 0.77 +0.4 1,024,410 + RR42_RS04585 0.88 +0.6 1,024,422 - RR42_RS04585 0.89 -0.7 1,024,509 + +0.8 1,024,532 + +0.1 1,024,532 + -1.0 1,024,533 - +1.0 1,024,533 - -1.4 1,024,533 - +0.9 1,024,533 - +0.2 1,024,562 - +1.6 1,024,595 + -0.2 1,024,596 - +1.3 1,024,604 + +0.5 1,024,605 - +0.9 1,024,605 - -1.4 1,024,611 - +0.7 1,024,613 - -0.3 1,024,615 + +0.4 1,024,616 - -1.6 1,024,666 - +3.2 1,024,669 + -0.4 1,024,694 - +0.3 1,024,751 + RR42_RS04590 0.16 +1.1 1,024,751 + RR42_RS04590 0.16 +0.7 1,024,751 + RR42_RS04590 0.16 +1.3 1,024,751 + RR42_RS04590 0.16 -0.1 1,024,848 + RR42_RS04590 0.35 +0.9 1,024,849 - RR42_RS04590 0.35 +1.5 1,024,851 + RR42_RS04590 0.36 +2.9 1,024,851 + RR42_RS04590 0.36 -0.4 1,024,851 + RR42_RS04590 0.36 +1.7 1,024,852 - RR42_RS04590 0.36 -2.2 1,024,931 + RR42_RS04590 0.52 -0.3 1,024,931 + RR42_RS04590 0.52 +0.9 1,024,931 + RR42_RS04590 0.52 +0.7 1,024,931 + RR42_RS04590 0.52 +0.4 1,024,931 + RR42_RS04590 0.52 -0.7 1,024,932 - RR42_RS04590 0.52 +0.1 1,024,932 - RR42_RS04590 0.52 -2.0 1,024,932 - RR42_RS04590 0.52 -0.3 1,024,975 + RR42_RS04590 0.60 +2.2 1,024,976 - RR42_RS04590 0.61 -0.9 1,024,976 - RR42_RS04590 0.61 -1.9 1,025,010 + RR42_RS04590 0.67 -0.0 1,025,047 - RR42_RS04590 0.75 +1.3 1,025,106 + RR42_RS04590 0.86 +0.1 1,025,106 + RR42_RS04590 0.86 -0.0 1,025,106 + RR42_RS04590 0.86 +0.8 1,025,107 - RR42_RS04590 0.87 +0.9 1,025,107 - RR42_RS04590 0.87 -1.9 1,025,107 - RR42_RS04590 0.87 -1.0 1,025,201 + +0.1 1,025,201 + +0.1 1,025,202 - -1.9 1,025,369 + RR42_RS04595 0.16 +0.6 1,025,370 - RR42_RS04595 0.16 -0.7 1,025,432 + RR42_RS04595 0.21 +1.7 1,025,432 + RR42_RS04595 0.21 -2.5 1,025,432 + RR42_RS04595 0.21 -0.4 1,025,432 + RR42_RS04595 0.21 +0.6 1,025,432 + RR42_RS04595 0.21 -1.2 1,025,433 - RR42_RS04595 0.22 -0.5 1,025,433 - RR42_RS04595 0.22 -0.3 1,025,433 - RR42_RS04595 0.22 +0.8 1,025,433 - RR42_RS04595 0.22 +1.1 1,025,433 - RR42_RS04595 0.22 -2.8 1,025,490 + RR42_RS04595 0.27 +0.6 1,025,490 + RR42_RS04595 0.27 -0.5 1,025,491 - RR42_RS04595 0.27 -0.2 1,025,492 + RR42_RS04595 0.27 +1.6 1,025,492 + RR42_RS04595 0.27 -0.5 1,025,492 + RR42_RS04595 0.27 +0.5 1,025,492 + RR42_RS04595 0.27 -1.1 1,025,492 + RR42_RS04595 0.27 +0.7 1,025,492 + RR42_RS04595 0.27 +0.5 1,025,493 - RR42_RS04595 0.27 +1.1 1,025,493 - RR42_RS04595 0.27 +0.6
Or see this region's nucleotide sequence