Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04545

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,014,116	+		RR42_RS04540	0.37	-3.1
1,014,116	+		RR42_RS04540	0.37	+0.8
1,014,233	+		RR42_RS04540	0.48	+0.1
1,014,233	+		RR42_RS04540	0.48	+0.9
1,014,233	+		RR42_RS04540	0.48	-0.1
1,014,233	+		RR42_RS04540	0.48	+0.1
1,014,234	-		RR42_RS04540	0.48	+0.3
1,014,284	-		RR42_RS04540	0.52	-1.7
1,014,284	-		RR42_RS04540	0.52	+1.0
1,014,353	+		RR42_RS04540	0.58	+0.7
1,014,353	+		RR42_RS04540	0.58	-1.1
1,014,354	-		RR42_RS04540	0.58	-2.6
1,014,354	-		RR42_RS04540	0.58	+0.5
1,014,497	+		RR42_RS04540	0.71	-0.7
1,014,498	-		RR42_RS04540	0.71	-1.2
1,014,501	+		RR42_RS04540	0.72	-0.6
1,014,501	+		RR42_RS04540	0.72	-0.7
1,014,501	+		RR42_RS04540	0.72	-1.7
1,014,501	+		RR42_RS04540	0.72	-1.0
1,014,502	-		RR42_RS04540	0.72	-0.1
1,014,502	-		RR42_RS04540	0.72	+0.7
1,014,563	+		RR42_RS04540	0.77	+0.3
1,014,563	+		RR42_RS04540	0.77	+0.1
1,014,563	+		RR42_RS04540	0.77	-2.8
1,014,563	+		RR42_RS04540	0.77	-1.6
1,014,563	+		RR42_RS04540	0.77	-0.7
1,014,564	-		RR42_RS04540	0.77	-0.1
1,014,564	-		RR42_RS04540	0.77	+0.4
1,014,694	-		RR42_RS04540	0.89	-1.0
1,014,839	+				+0.4
1,014,839	+				+0.8
1,014,841	+				+0.8
1,014,842	-				-0.7
1,014,842	-				-0.6
1,014,893	+				-0.2
1,014,894	-				+0.0
1,014,926	+				+0.5
1,014,926	+				-1.1
1,014,926	+				+0.7
1,014,926	+				-0.2
1,014,927	-				+0.5
1,014,927	-				+0.6
1,014,927	-				-0.4
1,014,947	+				+0.0
1,014,948	-				-0.2
1,014,948	-				+0.2
1,014,948	-				+0.0
1,014,948	-				+1.3
1,015,121	+		RR42_RS04545	0.20	+0.6
1,015,122	-		RR42_RS04545	0.21	-0.3
1,015,161	-		RR42_RS04545	0.25	-0.4
1,015,161	-		RR42_RS04545	0.25	+0.9
1,015,343	+		RR42_RS04545	0.44	+0.6
1,015,344	-		RR42_RS04545	0.45	+0.0
1,015,502	+		RR42_RS04545	0.62	-0.5
1,015,503	-		RR42_RS04545	0.62	+0.7
1,015,537	+		RR42_RS04545	0.65	-0.8
1,015,537	+		RR42_RS04545	0.65	-2.1
1,015,538	-		RR42_RS04545	0.66	-3.4
1,015,562	+		RR42_RS04545	0.68	-0.6
1,015,563	-		RR42_RS04545	0.68	+0.7
1,015,564	+		RR42_RS04545	0.68	+1.1
1,015,564	+		RR42_RS04545	0.68	-0.3
1,015,564	+		RR42_RS04545	0.68	+0.4
1,015,564	+		RR42_RS04545	0.68	+1.2
1,015,564	+		RR42_RS04545	0.68	+0.7
1,015,564	+		RR42_RS04545	0.68	+1.0
1,015,565	-		RR42_RS04545	0.69	-0.0
1,015,646	-		RR42_RS04545	0.77	-0.4
1,015,646	-		RR42_RS04545	0.77	+1.3
1,015,712	+		RR42_RS04545	0.84	-0.3
1,015,713	-		RR42_RS04545	0.85	-0.9
1,015,713	-		RR42_RS04545	0.85	-0.0
1,015,793	+				+0.0
1,015,794	-				-1.1
1,015,794	-				+0.1
1,015,794	-				-0.3
1,015,795	+				-0.2
1,015,795	+				-0.1
1,015,817	-				+0.8
1,015,854	-				+1.0
1,016,122	+		RR42_RS04550	0.32	-0.3
1,016,122	+		RR42_RS04550	0.32	-0.3
1,016,122	+		RR42_RS04550	0.32	+0.8
1,016,122	+		RR42_RS04550	0.32	+0.3
1,016,123	-		RR42_RS04550	0.32	+0.6
1,016,123	-		RR42_RS04550	0.32	-1.6
1,016,123	-		RR42_RS04550	0.32	-1.3
1,016,123	-		RR42_RS04550	0.32	+0.4
1,016,125	+		RR42_RS04550	0.32	+0.3
1,016,126	-		RR42_RS04550	0.32	+2.0
1,016,564	-		RR42_RS04550	0.87	+0.7
1,016,564	-		RR42_RS04550	0.87	-1.7
1,016,668	+				-0.2
1,016,669	-				+1.2
1,016,698	+				-0.1
1,016,698	+				+0.4
1,016,698	+				+1.0
1,016,699	+				-0.2
1,016,699	-				+1.1
1,016,700	+				+0.3
1,016,700	+				+1.0
1,016,701	-				-0.1
1,016,701	-				+0.9
1,016,701	-				-0.2
1,016,760	+				-2.8
1,016,761	-				+0.3
1,016,805	+				-1.2
1,016,806	-				+2.3
1,016,806	-				+0.3