Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04535

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
1,011,848	+		RR42_RS04530	0.39	-3.1
1,011,929	-		RR42_RS04530	0.45	-1.3
1,011,964	-		RR42_RS04530	0.48	-0.8
1,011,964	-		RR42_RS04530	0.48	-0.4
1,012,173	+		RR42_RS04530	0.64	-0.5
1,012,174	-		RR42_RS04530	0.64	+0.8
1,012,174	-		RR42_RS04530	0.64	+1.2
1,012,251	+		RR42_RS04530	0.70	+0.4
1,012,251	+		RR42_RS04530	0.70	-0.2
1,012,252	-		RR42_RS04530	0.70	+0.5
1,012,252	-		RR42_RS04530	0.70	-1.7
1,012,252	-		RR42_RS04530	0.70	+0.1
1,012,442	+		RR42_RS04530	0.84	-0.3
1,012,686	+				+0.6
1,012,686	+				+0.0
1,012,686	+				+1.4
1,012,687	-				-1.1
1,012,687	-				-0.5
1,012,687	-				-0.2
1,012,727	-				-2.8
1,012,727	-				-2.6
1,012,814	+		RR42_RS04535	0.10	+0.3
1,012,814	+		RR42_RS04535	0.10	-2.3
1,012,814	+		RR42_RS04535	0.10	-0.3
1,012,815	-		RR42_RS04535	0.11	-2.1
1,012,815	-		RR42_RS04535	0.11	-1.3
1,012,923	+		RR42_RS04535	0.22	-1.2
1,013,384	-		RR42_RS04535	0.74	-3.9
1,013,593	+				-1.6
1,013,777	+				-0.3
1,013,792	+				-0.0
1,013,792	+				-0.7
1,013,792	+				-0.2
1,013,792	+				-0.5
1,013,792	+				-1.1
1,013,793	-				-0.2
1,013,793	-				-0.6
1,013,793	-				-0.5
1,013,793	-				-2.1
1,013,793	-				-1.7
1,013,793	-				-2.3
1,013,816	+				-0.3
1,013,816	+				+0.3
1,013,817	-				+0.7
1,013,817	-				+0.3
1,013,817	-				-0.2
1,013,839	-		RR42_RS04540	0.12	-1.3
1,014,116	+		RR42_RS04540	0.37	-3.1
1,014,116	+		RR42_RS04540	0.37	+0.8
1,014,233	+		RR42_RS04540	0.48	+0.1
1,014,233	+		RR42_RS04540	0.48	+0.9
1,014,233	+		RR42_RS04540	0.48	-0.1
1,014,233	+		RR42_RS04540	0.48	+0.1
1,014,234	-		RR42_RS04540	0.48	+0.3
1,014,284	-		RR42_RS04540	0.52	-1.7
1,014,284	-		RR42_RS04540	0.52	+1.0
1,014,353	+		RR42_RS04540	0.58	+0.7
1,014,353	+		RR42_RS04540	0.58	-1.1
1,014,354	-		RR42_RS04540	0.58	-2.6
1,014,354	-		RR42_RS04540	0.58	+0.5
1,014,497	+		RR42_RS04540	0.71	-0.7
1,014,498	-		RR42_RS04540	0.71	-1.2
1,014,501	+		RR42_RS04540	0.72	-0.6
1,014,501	+		RR42_RS04540	0.72	-0.7
1,014,501	+		RR42_RS04540	0.72	-1.7
1,014,501	+		RR42_RS04540	0.72	-1.0
1,014,502	-		RR42_RS04540	0.72	-0.1
1,014,502	-		RR42_RS04540	0.72	+0.7
1,014,563	+		RR42_RS04540	0.77	+0.3
1,014,563	+		RR42_RS04540	0.77	+0.1
1,014,563	+		RR42_RS04540	0.77	-2.8
1,014,563	+		RR42_RS04540	0.77	-1.6
1,014,563	+		RR42_RS04540	0.77	-0.7
1,014,564	-		RR42_RS04540	0.77	-0.1
1,014,564	-		RR42_RS04540	0.77	+0.4