Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03990 and RR42_RS03995 are separated by 577 nucleotides RR42_RS03995 and RR42_RS04000 are separated by 631 nucleotides
RR42_RS03990: RR42_RS03990 - aspartate:proton symporter Glt <small>(from data)</small>, at 881,471 to 882,781
_RS03990
RR42_RS03995: RR42_RS03995 - diguanylate cyclase, at 883,359 to 886,721
_RS03995
RR42_RS04000: RR42_RS04000 - (2Fe-2S)-binding protein, at 887,353 to 887,811
_RS04000
Position (kb) 883
884
885
886
887 Strain fitness (log2 ratio) -2
-1
0
1
2 at 883.086 kb on + strand at 883.086 kb on + strand at 883.110 kb on - strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.444 kb on + strand at 883.445 kb on - strand at 883.612 kb on + strand at 883.612 kb on + strand at 883.613 kb on - strand at 883.954 kb on + strand, within RR42_RS03995 at 884.218 kb on + strand, within RR42_RS03995 at 884.218 kb on + strand, within RR42_RS03995 at 884.219 kb on - strand at 884.219 kb on - strand, within RR42_RS03995 at 884.226 kb on + strand, within RR42_RS03995 at 884.308 kb on + strand, within RR42_RS03995 at 884.462 kb on - strand, within RR42_RS03995 at 884.885 kb on + strand, within RR42_RS03995 at 884.886 kb on - strand, within RR42_RS03995 at 885.042 kb on - strand, within RR42_RS03995 at 885.402 kb on + strand, within RR42_RS03995 at 885.489 kb on + strand, within RR42_RS03995 at 885.490 kb on - strand, within RR42_RS03995 at 885.566 kb on - strand, within RR42_RS03995 at 885.605 kb on - strand, within RR42_RS03995 at 885.716 kb on - strand, within RR42_RS03995 at 885.985 kb on - strand, within RR42_RS03995 at 886.075 kb on + strand, within RR42_RS03995 at 886.075 kb on + strand, within RR42_RS03995 at 886.075 kb on + strand, within RR42_RS03995 at 886.075 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.179 kb on + strand, within RR42_RS03995 at 886.262 kb on - strand, within RR42_RS03995 at 886.369 kb on - strand, within RR42_RS03995 at 886.633 kb on - strand at 886.656 kb on + strand at 886.656 kb on + strand at 886.801 kb on - strand at 886.801 kb on - strand at 886.811 kb on + strand at 886.811 kb on + strand at 886.811 kb on + strand at 886.812 kb on - strand at 886.812 kb on - strand at 886.814 kb on - strand at 886.844 kb on - strand at 886.981 kb on + strand at 886.982 kb on - strand at 886.999 kb on - strand at 887.211 kb on + strand at 887.211 kb on + strand at 887.212 kb on - strand at 887.227 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.364 kb on - strand at 887.364 kb on - strand at 887.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 883,086 + +0.2 883,086 + +0.9 883,110 - -1.5 883,432 + -1.5 883,432 + +0.3 883,432 + +0.9 883,433 - -1.8 883,433 - -0.2 883,433 - +0.3 883,444 + -1.5 883,445 - -1.2 883,612 + +1.3 883,612 + -1.1 883,613 - -0.2 883,954 + RR42_RS03995 0.18 +0.7 884,218 + RR42_RS03995 0.26 +1.0 884,218 + RR42_RS03995 0.26 -2.1 884,219 - -1.3 884,219 - RR42_RS03995 0.26 +0.2 884,226 + RR42_RS03995 0.26 -1.6 884,308 + RR42_RS03995 0.28 -2.6 884,462 - RR42_RS03995 0.33 -0.6 884,885 + RR42_RS03995 0.45 +0.1 884,886 - RR42_RS03995 0.45 +0.0 885,042 - RR42_RS03995 0.50 -0.1 885,402 + RR42_RS03995 0.61 +2.3 885,489 + RR42_RS03995 0.63 -0.7 885,490 - RR42_RS03995 0.63 +0.3 885,566 - RR42_RS03995 0.66 -0.6 885,605 - RR42_RS03995 0.67 +0.0 885,716 - RR42_RS03995 0.70 -0.2 885,985 - RR42_RS03995 0.78 +2.1 886,075 + RR42_RS03995 0.81 +0.9 886,075 + RR42_RS03995 0.81 +0.1 886,075 + RR42_RS03995 0.81 -0.9 886,075 - RR42_RS03995 0.81 +0.5 886,076 - RR42_RS03995 0.81 -0.0 886,076 - RR42_RS03995 0.81 -0.7 886,076 - RR42_RS03995 0.81 -0.7 886,076 - RR42_RS03995 0.81 +0.5 886,076 - RR42_RS03995 0.81 +0.3 886,076 - RR42_RS03995 0.81 -1.0 886,179 + RR42_RS03995 0.84 +0.5 886,262 - RR42_RS03995 0.86 -0.3 886,369 - RR42_RS03995 0.90 +0.7 886,633 - -0.4 886,656 + +1.8 886,656 + +1.5 886,801 - +1.3 886,801 - -0.1 886,811 + +1.1 886,811 + +1.0 886,811 + +1.0 886,812 - -1.4 886,812 - +0.2 886,814 - -0.3 886,844 - +0.4 886,981 + +1.0 886,982 - -1.0 886,999 - +0.2 887,211 + +0.5 887,211 + -0.0 887,212 - -0.1 887,227 + +0.7 887,363 + +0.3 887,363 + +0.2 887,363 + +0.3 887,363 + -1.9 887,363 + +1.5 887,363 + -0.8 887,364 - -0.3 887,364 - -0.9 887,367 + +1.8
Or see this region's nucleotide sequence