Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03885 and RR42_RS03890 overlap by 8 nucleotides RR42_RS03890 and RR42_RS03895 overlap by 4 nucleotides RR42_RS03895 and RR42_RS03900 are separated by 29 nucleotides
RR42_RS03885: RR42_RS03885 - mammalian cell entry protein, at 856,680 to 858,311
_RS03885
RR42_RS03890: RR42_RS03890 - paraquat-inducible protein A, at 858,304 to 859,038
_RS03890
RR42_RS03895: RR42_RS03895 - paraquat-inducible protein A, at 859,035 to 859,667
_RS03895
RR42_RS03900: RR42_RS03900 - membrane protein, at 859,697 to 860,821
_RS03900
Position (kb) 858
859
860 Strain fitness (log2 ratio) -2
-1
0
1 at 857.309 kb on - strand, within RR42_RS03885 at 857.338 kb on - strand, within RR42_RS03885 at 857.733 kb on + strand, within RR42_RS03885 at 857.744 kb on - strand, within RR42_RS03885 at 857.746 kb on + strand, within RR42_RS03885 at 857.747 kb on - strand, within RR42_RS03885 at 857.895 kb on - strand, within RR42_RS03885 at 857.896 kb on + strand, within RR42_RS03885 at 857.896 kb on + strand, within RR42_RS03885 at 857.897 kb on - strand, within RR42_RS03885 at 858.300 kb on + strand at 858.301 kb on - strand at 858.318 kb on + strand at 858.319 kb on - strand at 858.319 kb on - strand at 858.515 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.662 kb on - strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.666 kb on - strand, within RR42_RS03890 at 858.750 kb on - strand, within RR42_RS03890 at 859.300 kb on + strand, within RR42_RS03895 at 859.301 kb on - strand, within RR42_RS03895 at 859.456 kb on + strand, within RR42_RS03895 at 859.516 kb on + strand, within RR42_RS03895 at 859.517 kb on - strand, within RR42_RS03895 at 859.844 kb on - strand, within RR42_RS03900 at 860.022 kb on + strand, within RR42_RS03900
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 857,309 - RR42_RS03885 0.39 +1.2 857,338 - RR42_RS03885 0.40 +1.6 857,733 + RR42_RS03885 0.65 +0.4 857,744 - RR42_RS03885 0.65 -0.7 857,746 + RR42_RS03885 0.65 -2.2 857,747 - RR42_RS03885 0.65 -1.6 857,895 - RR42_RS03885 0.74 +0.3 857,896 + RR42_RS03885 0.75 -0.5 857,896 + RR42_RS03885 0.75 +0.7 857,897 - RR42_RS03885 0.75 -0.2 858,300 + +0.6 858,301 - +0.0 858,318 + -0.6 858,319 - -1.0 858,319 - +0.5 858,515 + RR42_RS03890 0.29 +0.1 858,661 + RR42_RS03890 0.49 +0.8 858,661 + RR42_RS03890 0.49 -0.7 858,662 - RR42_RS03890 0.49 -0.5 858,665 + RR42_RS03890 0.49 +0.0 858,665 + RR42_RS03890 0.49 -0.9 858,665 + RR42_RS03890 0.49 +1.0 858,666 - RR42_RS03890 0.49 -2.5 858,750 - RR42_RS03890 0.61 +0.7 859,300 + RR42_RS03895 0.42 -0.7 859,301 - RR42_RS03895 0.42 -1.0 859,456 + RR42_RS03895 0.67 -0.7 859,516 + RR42_RS03895 0.76 -0.7 859,517 - RR42_RS03895 0.76 -0.1 859,844 - RR42_RS03900 0.13 +0.1 860,022 + RR42_RS03900 0.29 +0.3
Or see this region's nucleotide sequence