Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03260 and RR42_RS03265 are separated by 161 nucleotides RR42_RS03265 and RR42_RS03270 are separated by 354 nucleotides RR42_RS03270 and RR42_RS03275 are separated by 94 nucleotides
RR42_RS03260: RR42_RS03260 - branched-chain amino acid ABC transporter substrate-binding protein, at 721,953 to 723,071
_RS03260
RR42_RS03265: RR42_RS03265 - hypothetical protein, at 723,233 to 724,513
_RS03265
RR42_RS03270: RR42_RS03270 - membrane protein, at 724,868 to 725,077
_RS03270
RR42_RS03275: RR42_RS03275 - membrane protein, at 725,172 to 725,642
_RS03275
Position (kb) 723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 722.242 kb on + strand, within RR42_RS03260 at 722.384 kb on - strand, within RR42_RS03260 at 722.528 kb on - strand, within RR42_RS03260 at 722.704 kb on + strand, within RR42_RS03260 at 722.705 kb on - strand, within RR42_RS03260 at 722.906 kb on + strand, within RR42_RS03260 at 722.907 kb on - strand, within RR42_RS03260 at 722.907 kb on - strand, within RR42_RS03260 at 722.907 kb on - strand, within RR42_RS03260 at 722.908 kb on + strand, within RR42_RS03260 at 723.195 kb on - strand at 723.195 kb on - strand at 723.234 kb on + strand at 723.285 kb on + strand at 723.286 kb on - strand at 723.463 kb on - strand, within RR42_RS03265 at 723.519 kb on + strand, within RR42_RS03265 at 723.520 kb on - strand, within RR42_RS03265 at 723.520 kb on - strand, within RR42_RS03265 at 723.599 kb on + strand, within RR42_RS03265 at 723.654 kb on + strand, within RR42_RS03265 at 723.654 kb on + strand, within RR42_RS03265 at 723.655 kb on - strand, within RR42_RS03265 at 723.655 kb on - strand, within RR42_RS03265 at 723.918 kb on + strand, within RR42_RS03265 at 723.918 kb on + strand, within RR42_RS03265 at 723.919 kb on - strand, within RR42_RS03265 at 723.988 kb on - strand, within RR42_RS03265 at 724.138 kb on + strand, within RR42_RS03265 at 724.139 kb on - strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.297 kb on - strand, within RR42_RS03265 at 724.442 kb on + strand at 724.442 kb on + strand at 724.442 kb on + strand at 724.755 kb on + strand at 724.755 kb on + strand at 724.756 kb on - strand at 724.756 kb on - strand at 724.756 kb on - strand at 724.764 kb on + strand at 724.764 kb on + strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.874 kb on - strand at 724.879 kb on - strand at 724.888 kb on + strand at 724.888 kb on + strand at 725.166 kb on + strand at 725.166 kb on + strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.187 kb on + strand at 725.281 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.479 kb on + strand, within RR42_RS03275 at 725.480 kb on - strand, within RR42_RS03275
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 722,242 + RR42_RS03260 0.26 -1.4 722,384 - RR42_RS03260 0.39 -0.4 722,528 - RR42_RS03260 0.51 +0.3 722,704 + RR42_RS03260 0.67 -1.4 722,705 - RR42_RS03260 0.67 -0.9 722,906 + RR42_RS03260 0.85 -0.9 722,907 - RR42_RS03260 0.85 +0.5 722,907 - RR42_RS03260 0.85 +0.4 722,907 - RR42_RS03260 0.85 +2.7 722,908 + RR42_RS03260 0.85 +1.4 723,195 - -1.8 723,195 - -0.5 723,234 + +0.4 723,285 + -0.0 723,286 - -0.2 723,463 - RR42_RS03265 0.18 -1.6 723,519 + RR42_RS03265 0.22 +1.7 723,520 - RR42_RS03265 0.22 -1.5 723,520 - RR42_RS03265 0.22 -0.2 723,599 + RR42_RS03265 0.29 +0.1 723,654 + RR42_RS03265 0.33 +0.8 723,654 + RR42_RS03265 0.33 +1.0 723,655 - RR42_RS03265 0.33 -0.2 723,655 - RR42_RS03265 0.33 -0.2 723,918 + RR42_RS03265 0.53 -0.7 723,918 + RR42_RS03265 0.53 +1.4 723,919 - RR42_RS03265 0.54 -1.6 723,988 - RR42_RS03265 0.59 -1.7 724,138 + RR42_RS03265 0.71 -0.8 724,139 - RR42_RS03265 0.71 +0.1 724,293 + RR42_RS03265 0.83 -0.2 724,293 + RR42_RS03265 0.83 +0.2 724,293 + RR42_RS03265 0.83 -0.1 724,294 - RR42_RS03265 0.83 +0.9 724,294 - RR42_RS03265 0.83 -0.5 724,294 - RR42_RS03265 0.83 +0.2 724,297 - RR42_RS03265 0.83 +1.9 724,442 + +0.1 724,442 + +0.2 724,442 + -1.2 724,755 + +0.3 724,755 + +1.1 724,756 - -0.2 724,756 - +0.0 724,756 - +0.7 724,764 + -0.2 724,764 + +1.2 724,765 - +1.7 724,765 - -0.9 724,765 - -0.2 724,765 - +0.1 724,874 - -0.2 724,879 - +0.5 724,888 + -0.6 724,888 + -0.0 725,166 + -0.2 725,166 + -0.6 725,167 - +1.0 725,167 - -1.5 725,167 - -0.9 725,167 - -1.1 725,187 + -2.3 725,281 + RR42_RS03275 0.23 -1.6 725,290 + RR42_RS03275 0.25 -0.6 725,290 + RR42_RS03275 0.25 -2.5 725,290 + RR42_RS03275 0.25 -2.2 725,290 + RR42_RS03275 0.25 -1.2 725,290 + RR42_RS03275 0.25 -1.9 725,290 + RR42_RS03275 0.25 +1.0 725,291 - RR42_RS03275 0.25 +0.4 725,291 - RR42_RS03275 0.25 -3.1 725,291 - RR42_RS03275 0.25 -1.6 725,479 + RR42_RS03275 0.65 -1.8 725,480 - RR42_RS03275 0.65 -2.5
Or see this region's nucleotide sequence