Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02820 and RR42_RS02825 are separated by 36 nucleotides RR42_RS02825 and RR42_RS02830 overlap by 4 nucleotides RR42_RS02830 and RR42_RS02835 are separated by 480 nucleotides
RR42_RS02820: RR42_RS02820 - glycyl-tRNA synthetase subunit beta, at 626,955 to 629,087
_RS02820
RR42_RS02825: RR42_RS02825 - hypothetical protein, at 629,124 to 629,780
_RS02825
RR42_RS02830: RR42_RS02830 - glycyl-tRNA synthetase subunit alpha, at 629,777 to 630,727
_RS02830
RR42_RS02835: RR42_RS02835 - acyltransferase, at 631,208 to 632,815
_RS02835
Position (kb) 629
630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 629.144 kb on + strand at 629.144 kb on + strand at 629.145 kb on - strand at 629.145 kb on - strand at 629.145 kb on - strand at 629.390 kb on - strand, within RR42_RS02825 at 629.390 kb on - strand, within RR42_RS02825 at 629.390 kb on - strand, within RR42_RS02825 at 629.393 kb on - strand, within RR42_RS02825 at 629.393 kb on - strand, within RR42_RS02825 at 629.666 kb on - strand, within RR42_RS02825 at 630.739 kb on - strand at 630.742 kb on - strand at 630.742 kb on - strand at 630.879 kb on + strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.880 kb on - strand at 630.963 kb on + strand at 630.963 kb on + strand at 630.999 kb on + strand at 631.007 kb on - strand at 631.010 kb on - strand at 631.096 kb on + strand at 631.097 kb on - strand at 631.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 629,144 + +0.7 629,144 + -1.0 629,145 - +0.7 629,145 - -2.9 629,145 - +0.7 629,390 - RR42_RS02825 0.40 -0.1 629,390 - RR42_RS02825 0.40 -0.5 629,390 - RR42_RS02825 0.40 -0.2 629,393 - RR42_RS02825 0.41 +0.3 629,393 - RR42_RS02825 0.41 -1.8 629,666 - RR42_RS02825 0.82 -1.9 630,739 - -0.6 630,742 - -0.4 630,742 - -1.5 630,879 + +0.6 630,880 - +0.0 630,880 - -1.3 630,880 - -1.3 630,880 - +0.5 630,880 - -0.9 630,880 - -0.5 630,880 - -1.8 630,880 - +1.1 630,963 + +0.5 630,963 + -3.7 630,999 + +0.7 631,007 - -0.8 631,010 - +0.0 631,096 + +0.3 631,097 - -1.8 631,204 - -2.2
Or see this region's nucleotide sequence