Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02330 and RR42_RS02335 are separated by 14 nucleotides RR42_RS02335 and RR42_RS02340 are separated by 20 nucleotides RR42_RS02340 and RR42_RS02345 overlap by 28 nucleotides RR42_RS02345 and RR42_RS02350 overlap by 10 nucleotides
RR42_RS02330: RR42_RS02330 - trehalose-6-phosphate synthase, at 522,790 to 524,190
_RS02330
RR42_RS02335: RR42_RS02335 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 524,205 to 524,810
_RS02335
RR42_RS02340: RR42_RS02340 - lipoprotein, at 524,831 to 525,859
_RS02340
RR42_RS02345: RR42_RS02345 - carbon monoxide dehydrogenase, at 525,832 to 526,413
_RS02345
RR42_RS02350: RR42_RS02350 - VWA domain-containing protein, at 526,404 to 527,699
_RS02350
Position (kb) 524
525
526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 523.962 kb on - strand, within RR42_RS02330 at 524.017 kb on + strand, within RR42_RS02330 at 524.022 kb on + strand, within RR42_RS02330 at 524.023 kb on - strand, within RR42_RS02330 at 524.061 kb on + strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.146 kb on + strand at 524.146 kb on + strand at 524.147 kb on - strand at 524.147 kb on - strand at 524.181 kb on - strand at 524.224 kb on - strand at 524.658 kb on + strand, within RR42_RS02335 at 524.994 kb on + strand, within RR42_RS02340 at 524.994 kb on + strand, within RR42_RS02340 at 524.995 kb on - strand, within RR42_RS02340 at 525.105 kb on + strand, within RR42_RS02340 at 525.106 kb on - strand, within RR42_RS02340 at 525.106 kb on - strand, within RR42_RS02340 at 525.270 kb on + strand, within RR42_RS02340 at 525.271 kb on - strand, within RR42_RS02340 at 525.333 kb on + strand, within RR42_RS02340 at 525.615 kb on + strand, within RR42_RS02340 at 525.791 kb on + strand at 525.792 kb on - strand at 526.011 kb on + strand, within RR42_RS02345 at 526.012 kb on - strand, within RR42_RS02345 at 526.095 kb on - strand, within RR42_RS02345 at 526.193 kb on + strand, within RR42_RS02345 at 526.382 kb on - strand at 526.687 kb on - strand, within RR42_RS02350
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 523,962 - RR42_RS02330 0.84 -1.2 524,017 + RR42_RS02330 0.88 -1.8 524,022 + RR42_RS02330 0.88 -0.3 524,023 - RR42_RS02330 0.88 -1.5 524,061 + -0.4 524,062 - -0.1 524,062 - -2.8 524,062 - -0.7 524,062 - +0.1 524,146 + -2.2 524,146 + -0.4 524,147 - +0.3 524,147 - -1.3 524,181 - -1.9 524,224 - +0.9 524,658 + RR42_RS02335 0.75 +0.5 524,994 + RR42_RS02340 0.16 +0.1 524,994 + RR42_RS02340 0.16 -0.8 524,995 - RR42_RS02340 0.16 +0.5 525,105 + RR42_RS02340 0.27 -0.1 525,106 - RR42_RS02340 0.27 +2.8 525,106 - RR42_RS02340 0.27 -0.2 525,270 + RR42_RS02340 0.43 -1.7 525,271 - RR42_RS02340 0.43 +0.7 525,333 + RR42_RS02340 0.49 -0.2 525,615 + RR42_RS02340 0.76 +0.8 525,791 + -0.0 525,792 - -0.2 526,011 + RR42_RS02345 0.31 -1.6 526,012 - RR42_RS02345 0.31 -0.2 526,095 - RR42_RS02345 0.45 +0.3 526,193 + RR42_RS02345 0.62 -1.1 526,382 - -1.5 526,687 - RR42_RS02350 0.22 -0.9
Or see this region's nucleotide sequence