Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01940 and RR42_RS01945 are separated by 125 nucleotides RR42_RS01945 and RR42_RS01950 are separated by 18 nucleotides RR42_RS01950 and RR42_RS01955 are separated by 85 nucleotides
RR42_RS01940: RR42_RS01940 - glycosyl transferase, at 434,726 to 435,754
_RS01940
RR42_RS01945: RR42_RS01945 - nitrate ABC transporter ATP-binding protein, at 435,880 to 436,683
_RS01945
RR42_RS01950: RR42_RS01950 - nitrate ABC transporter permease, at 436,702 to 437,640
_RS01950
RR42_RS01955: RR42_RS01955 - nitrate transporter, at 437,726 to 439,045
_RS01955
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 435.956 kb on + strand at 435.957 kb on - strand at 436.280 kb on + strand, within RR42_RS01945 at 436.280 kb on + strand, within RR42_RS01945 at 436.388 kb on + strand, within RR42_RS01945 at 436.388 kb on + strand, within RR42_RS01945 at 436.389 kb on - strand, within RR42_RS01945 at 436.389 kb on - strand, within RR42_RS01945 at 436.389 kb on - strand, within RR42_RS01945 at 436.572 kb on + strand, within RR42_RS01945 at 436.573 kb on - strand, within RR42_RS01945 at 436.703 kb on + strand at 436.703 kb on + strand at 436.703 kb on + strand at 436.703 kb on + strand at 436.704 kb on - strand at 436.704 kb on - strand at 436.704 kb on - strand at 436.704 kb on - strand at 436.704 kb on - strand at 436.893 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.925 kb on + strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.926 kb on - strand, within RR42_RS01950 at 436.957 kb on - strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.003 kb on + strand, within RR42_RS01950 at 437.004 kb on - strand, within RR42_RS01950 at 437.004 kb on - strand, within RR42_RS01950 at 437.073 kb on + strand, within RR42_RS01950 at 437.074 kb on - strand, within RR42_RS01950 at 437.319 kb on - strand, within RR42_RS01950 at 437.434 kb on + strand, within RR42_RS01950 at 437.862 kb on + strand, within RR42_RS01955 at 437.863 kb on - strand, within RR42_RS01955 at 437.863 kb on - strand, within RR42_RS01955 at 437.863 kb on - strand, within RR42_RS01955 at 437.901 kb on + strand, within RR42_RS01955 at 437.902 kb on - strand, within RR42_RS01955 at 437.976 kb on + strand, within RR42_RS01955 at 437.976 kb on + strand, within RR42_RS01955 at 437.977 kb on - strand, within RR42_RS01955 at 437.997 kb on + strand, within RR42_RS01955 at 437.997 kb on + strand, within RR42_RS01955 at 437.997 kb on + strand, within RR42_RS01955 at 437.997 kb on + strand, within RR42_RS01955 at 438.046 kb on + strand, within RR42_RS01955 at 438.047 kb on - strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.096 kb on + strand, within RR42_RS01955 at 438.156 kb on + strand, within RR42_RS01955 at 438.156 kb on + strand, within RR42_RS01955 at 438.157 kb on - strand, within RR42_RS01955 at 438.207 kb on + strand, within RR42_RS01955 at 438.444 kb on + strand, within RR42_RS01955 at 438.445 kb on - strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.447 kb on + strand, within RR42_RS01955 at 438.448 kb on - strand, within RR42_RS01955 at 438.495 kb on + strand, within RR42_RS01955
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 435,956 + +1.9 435,957 - -0.1 436,280 + RR42_RS01945 0.50 +0.7 436,280 + RR42_RS01945 0.50 +1.0 436,388 + RR42_RS01945 0.63 -0.5 436,388 + RR42_RS01945 0.63 -2.2 436,389 - RR42_RS01945 0.63 -1.5 436,389 - RR42_RS01945 0.63 +0.4 436,389 - RR42_RS01945 0.63 -1.5 436,572 + RR42_RS01945 0.86 -0.3 436,573 - RR42_RS01945 0.86 +1.9 436,703 + +0.5 436,703 + +1.2 436,703 + -0.3 436,703 + +2.9 436,704 - +0.1 436,704 - +1.3 436,704 - +1.0 436,704 - +0.3 436,704 - +1.4 436,893 + RR42_RS01950 0.20 +0.4 436,925 + RR42_RS01950 0.24 -1.3 436,925 + RR42_RS01950 0.24 +0.7 436,925 + RR42_RS01950 0.24 +0.2 436,925 + RR42_RS01950 0.24 +1.4 436,925 + RR42_RS01950 0.24 -2.3 436,926 - RR42_RS01950 0.24 +1.7 436,926 - RR42_RS01950 0.24 -0.2 436,926 - RR42_RS01950 0.24 -0.7 436,926 - RR42_RS01950 0.24 +0.5 436,926 - RR42_RS01950 0.24 -1.1 436,926 - RR42_RS01950 0.24 -0.2 436,957 - RR42_RS01950 0.27 -0.3 437,003 + RR42_RS01950 0.32 -0.2 437,003 + RR42_RS01950 0.32 -0.2 437,003 + RR42_RS01950 0.32 -1.5 437,003 + RR42_RS01950 0.32 +0.4 437,003 + RR42_RS01950 0.32 -0.7 437,004 - RR42_RS01950 0.32 +0.6 437,004 - RR42_RS01950 0.32 +0.7 437,073 + RR42_RS01950 0.40 -2.2 437,074 - RR42_RS01950 0.40 -0.3 437,319 - RR42_RS01950 0.66 +0.4 437,434 + RR42_RS01950 0.78 +0.4 437,862 + RR42_RS01955 0.10 -0.6 437,863 - RR42_RS01955 0.10 -0.5 437,863 - RR42_RS01955 0.10 -0.3 437,863 - RR42_RS01955 0.10 +0.3 437,901 + RR42_RS01955 0.13 +0.5 437,902 - RR42_RS01955 0.13 +0.6 437,976 + RR42_RS01955 0.19 -1.0 437,976 + RR42_RS01955 0.19 -0.6 437,977 - RR42_RS01955 0.19 -0.0 437,997 + RR42_RS01955 0.21 +0.2 437,997 + RR42_RS01955 0.21 -1.0 437,997 + RR42_RS01955 0.21 -0.8 437,997 + RR42_RS01955 0.21 +0.8 438,046 + RR42_RS01955 0.24 -1.2 438,047 - RR42_RS01955 0.24 +0.0 438,096 + RR42_RS01955 0.28 +0.5 438,096 + RR42_RS01955 0.28 +1.1 438,096 + RR42_RS01955 0.28 +0.5 438,096 + RR42_RS01955 0.28 +0.3 438,096 + RR42_RS01955 0.28 -3.3 438,096 + RR42_RS01955 0.28 +0.9 438,156 + RR42_RS01955 0.33 -0.4 438,156 + RR42_RS01955 0.33 +0.1 438,157 - RR42_RS01955 0.33 -1.3 438,207 + RR42_RS01955 0.36 -1.0 438,444 + RR42_RS01955 0.54 -1.1 438,445 - RR42_RS01955 0.54 -0.9 438,447 + RR42_RS01955 0.55 +0.6 438,447 + RR42_RS01955 0.55 +0.9 438,447 + RR42_RS01955 0.55 +0.3 438,447 + RR42_RS01955 0.55 -1.3 438,447 + RR42_RS01955 0.55 +0.2 438,447 + RR42_RS01955 0.55 +0.2 438,447 + RR42_RS01955 0.55 +0.3 438,448 - RR42_RS01955 0.55 +0.9 438,495 + RR42_RS01955 0.58 +1.0
Or see this region's nucleotide sequence