Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01615 and RR42_RS01620 are separated by 58 nucleotides RR42_RS01620 and RR42_RS01625 are separated by 236 nucleotides
RR42_RS01615: RR42_RS01615 - aerotaxis receptor Aer, at 367,467 to 369,011
_RS01615
RR42_RS01620: RR42_RS01620 - Crp/Fnr family transcriptional regulator, at 369,070 to 369,738
_RS01620
RR42_RS01625: RR42_RS01625 - long-chain fatty acid--CoA ligase, at 369,975 to 371,945
_RS01625
Position (kb) 369
370 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 368.186 kb on + strand, within RR42_RS01615 at 368.365 kb on + strand, within RR42_RS01615 at 368.365 kb on + strand, within RR42_RS01615 at 368.792 kb on + strand, within RR42_RS01615 at 368.847 kb on - strand, within RR42_RS01615 at 369.106 kb on + strand at 369.106 kb on + strand at 369.107 kb on - strand at 369.107 kb on - strand at 369.123 kb on - strand at 369.187 kb on + strand, within RR42_RS01620 at 369.188 kb on - strand, within RR42_RS01620 at 369.248 kb on + strand, within RR42_RS01620 at 369.464 kb on + strand, within RR42_RS01620 at 369.619 kb on - strand, within RR42_RS01620 at 369.630 kb on - strand, within RR42_RS01620 at 369.643 kb on - strand, within RR42_RS01620 at 369.676 kb on - strand at 369.812 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.909 kb on + strand at 369.909 kb on + strand at 369.911 kb on + strand at 369.912 kb on - strand at 369.912 kb on - strand at 370.083 kb on + strand at 370.084 kb on - strand at 370.084 kb on - strand at 370.084 kb on - strand at 370.084 kb on - strand at 370.198 kb on - strand, within RR42_RS01625 at 370.249 kb on - strand, within RR42_RS01625 at 370.249 kb on - strand, within RR42_RS01625 at 370.278 kb on + strand, within RR42_RS01625 at 370.278 kb on + strand, within RR42_RS01625 at 370.278 kb on + strand, within RR42_RS01625 at 370.279 kb on - strand, within RR42_RS01625 at 370.279 kb on - strand, within RR42_RS01625 at 370.364 kb on - strand, within RR42_RS01625 at 370.398 kb on + strand, within RR42_RS01625 at 370.425 kb on + strand, within RR42_RS01625 at 370.501 kb on - strand, within RR42_RS01625 at 370.554 kb on + strand, within RR42_RS01625 at 370.674 kb on + strand, within RR42_RS01625 at 370.675 kb on - strand, within RR42_RS01625 at 370.675 kb on - strand, within RR42_RS01625
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 368,186 + RR42_RS01615 0.47 -1.0 368,365 + RR42_RS01615 0.58 -1.4 368,365 + RR42_RS01615 0.58 -0.2 368,792 + RR42_RS01615 0.86 +0.3 368,847 - RR42_RS01615 0.89 -1.2 369,106 + +0.7 369,106 + +0.3 369,107 - -0.1 369,107 - -0.8 369,123 - +0.5 369,187 + RR42_RS01620 0.17 +0.2 369,188 - RR42_RS01620 0.18 +0.6 369,248 + RR42_RS01620 0.27 -0.1 369,464 + RR42_RS01620 0.59 +0.4 369,619 - RR42_RS01620 0.82 +0.4 369,630 - RR42_RS01620 0.84 +1.0 369,643 - RR42_RS01620 0.86 -0.9 369,676 - -2.7 369,812 + -1.3 369,817 + +0.5 369,817 + -0.7 369,817 + -0.0 369,817 + +0.5 369,817 + +0.4 369,909 + +0.3 369,909 + +2.9 369,911 + +0.8 369,912 - +0.2 369,912 - -1.2 370,083 + +2.9 370,084 - -1.0 370,084 - +0.5 370,084 - +0.3 370,084 - -0.2 370,198 - RR42_RS01625 0.11 +2.5 370,249 - RR42_RS01625 0.14 +0.5 370,249 - RR42_RS01625 0.14 -1.4 370,278 + RR42_RS01625 0.15 +0.7 370,278 + RR42_RS01625 0.15 +0.4 370,278 + RR42_RS01625 0.15 -0.5 370,279 - RR42_RS01625 0.15 -0.1 370,279 - RR42_RS01625 0.15 -0.2 370,364 - RR42_RS01625 0.20 -1.5 370,398 + RR42_RS01625 0.21 +1.7 370,425 + RR42_RS01625 0.23 +1.3 370,501 - RR42_RS01625 0.27 -1.0 370,554 + RR42_RS01625 0.29 -2.3 370,674 + RR42_RS01625 0.35 -0.3 370,675 - RR42_RS01625 0.36 +1.3 370,675 - RR42_RS01625 0.36 -0.1
Or see this region's nucleotide sequence