Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01610 and RR42_RS01615 are separated by 461 nucleotides RR42_RS01615 and RR42_RS01620 are separated by 58 nucleotides RR42_RS01620 and RR42_RS01625 are separated by 236 nucleotides
RR42_RS01610: RR42_RS01610 - 3-hydroxybutyryl-CoA dehydrogenase, at 366,151 to 367,005
_RS01610
RR42_RS01615: RR42_RS01615 - aerotaxis receptor Aer, at 367,467 to 369,011
_RS01615
RR42_RS01620: RR42_RS01620 - Crp/Fnr family transcriptional regulator, at 369,070 to 369,738
_RS01620
RR42_RS01625: RR42_RS01625 - long-chain fatty acid--CoA ligase, at 369,975 to 371,945
_RS01625
Position (kb) 367
368
369
370 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 366.758 kb on + strand, within RR42_RS01610 at 366.893 kb on - strand, within RR42_RS01610 at 366.893 kb on - strand, within RR42_RS01610 at 366.989 kb on - strand at 366.989 kb on - strand at 366.994 kb on + strand at 366.994 kb on + strand at 366.995 kb on - strand at 367.158 kb on + strand at 367.158 kb on + strand at 367.181 kb on - strand at 367.235 kb on - strand at 367.235 kb on - strand at 367.238 kb on - strand at 367.320 kb on + strand at 367.321 kb on - strand at 367.392 kb on - strand at 367.466 kb on + strand at 367.501 kb on - strand at 367.629 kb on - strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.797 kb on + strand, within RR42_RS01615 at 367.798 kb on - strand, within RR42_RS01615 at 367.854 kb on + strand, within RR42_RS01615 at 367.874 kb on + strand, within RR42_RS01615 at 368.186 kb on + strand, within RR42_RS01615 at 368.365 kb on + strand, within RR42_RS01615 at 368.365 kb on + strand, within RR42_RS01615 at 368.792 kb on + strand, within RR42_RS01615 at 368.847 kb on - strand, within RR42_RS01615 at 369.106 kb on + strand at 369.106 kb on + strand at 369.107 kb on - strand at 369.107 kb on - strand at 369.123 kb on - strand at 369.187 kb on + strand, within RR42_RS01620 at 369.188 kb on - strand, within RR42_RS01620 at 369.248 kb on + strand, within RR42_RS01620 at 369.464 kb on + strand, within RR42_RS01620 at 369.619 kb on - strand, within RR42_RS01620 at 369.630 kb on - strand, within RR42_RS01620 at 369.643 kb on - strand, within RR42_RS01620 at 369.676 kb on - strand at 369.812 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.817 kb on + strand at 369.909 kb on + strand at 369.909 kb on + strand at 369.911 kb on + strand at 369.912 kb on - strand at 369.912 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 366,758 + RR42_RS01610 0.71 +0.3 366,893 - RR42_RS01610 0.87 +2.0 366,893 - RR42_RS01610 0.87 +0.9 366,989 - +0.4 366,989 - -0.4 366,994 + +0.9 366,994 + -0.2 366,995 - -0.8 367,158 + -1.9 367,158 + -0.3 367,181 - +0.8 367,235 - +0.6 367,235 - -1.0 367,238 - -0.4 367,320 + +0.1 367,321 - +0.9 367,392 - -0.1 367,466 + -1.1 367,501 - +0.5 367,629 - RR42_RS01615 0.10 -1.0 367,797 + RR42_RS01615 0.21 -1.0 367,797 + RR42_RS01615 0.21 -0.6 367,797 + RR42_RS01615 0.21 +0.3 367,798 - RR42_RS01615 0.21 -0.3 367,854 + RR42_RS01615 0.25 -0.1 367,874 + RR42_RS01615 0.26 +0.4 368,186 + RR42_RS01615 0.47 -1.0 368,365 + RR42_RS01615 0.58 -1.4 368,365 + RR42_RS01615 0.58 -0.2 368,792 + RR42_RS01615 0.86 +0.3 368,847 - RR42_RS01615 0.89 -1.2 369,106 + +0.7 369,106 + +0.3 369,107 - -0.1 369,107 - -0.8 369,123 - +0.5 369,187 + RR42_RS01620 0.17 +0.2 369,188 - RR42_RS01620 0.18 +0.6 369,248 + RR42_RS01620 0.27 -0.1 369,464 + RR42_RS01620 0.59 +0.4 369,619 - RR42_RS01620 0.82 +0.4 369,630 - RR42_RS01620 0.84 +1.0 369,643 - RR42_RS01620 0.86 -0.9 369,676 - -2.7 369,812 + -1.3 369,817 + +0.5 369,817 + -0.7 369,817 + -0.0 369,817 + +0.5 369,817 + +0.4 369,909 + +0.3 369,909 + +2.9 369,911 + +0.8 369,912 - +0.2 369,912 - -1.2
Or see this region's nucleotide sequence