Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01380

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01375 and RR42_RS01380 are separated by 129 nucleotidesRR42_RS01380 and RR42_RS01385 are separated by 62 nucleotidesRR42_RS01385 and RR42_RS01390 are separated by 22 nucleotides RR42_RS01375: RR42_RS01375 - S-adenosyl-L-homocysteine hydrolase, at 311,482 to 312,915 _RS01375 RR42_RS01380: RR42_RS01380 - membrane protein, at 313,045 to 313,398 _RS01380 RR42_RS01385: RR42_RS01385 - 5,10-methylenetetrahydrofolate reductase, at 313,461 to 314,291 _RS01385 RR42_RS01390: RR42_RS01390 - competence protein, at 314,314 to 314,676 _RS01390 Position (kb) 313 314Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 313.173 kb on + strand, within RR42_RS01380at 313.173 kb on + strand, within RR42_RS01380at 313.174 kb on - strand, within RR42_RS01380at 313.174 kb on - strand, within RR42_RS01380at 313.174 kb on - strand, within RR42_RS01380at 313.340 kb on - strand, within RR42_RS01380at 313.717 kb on - strand, within RR42_RS01385at 313.875 kb on + strand, within RR42_RS01385at 313.962 kb on + strand, within RR42_RS01385at 314.235 kb on + strandat 314.237 kb on + strandat 314.237 kb on + strandat 314.289 kb on + strandat 314.290 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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313,173 + RR42_RS01380 0.36 -1.7
313,173 + RR42_RS01380 0.36 -0.6
313,174 - RR42_RS01380 0.36 -2.8
313,174 - RR42_RS01380 0.36 -2.5
313,174 - RR42_RS01380 0.36 -3.6
313,340 - RR42_RS01380 0.83 -2.7
313,717 - RR42_RS01385 0.31 -3.5
313,875 + RR42_RS01385 0.50 -1.7
313,962 + RR42_RS01385 0.60 -3.9
314,235 + -2.0
314,237 + -1.2
314,237 + -5.0
314,289 + +0.9
314,290 - +2.0

Or see this region's nucleotide sequence