Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01360 and RR42_RS01365 are separated by 4 nucleotides RR42_RS01365 and RR42_RS01370 are separated by 93 nucleotides RR42_RS01370 and RR42_RS01375 are separated by 286 nucleotides
RR42_RS01360: RR42_RS01360 - phenylacetic acid degradation protein, at 309,398 to 309,826
_RS01360
RR42_RS01365: RR42_RS01365 - hypothetical protein, at 309,831 to 310,271
_RS01365
RR42_RS01370: RR42_RS01370 - phosphomethylpyrimidine kinase, at 310,365 to 311,195
_RS01370
RR42_RS01375: RR42_RS01375 - S-adenosyl-L-homocysteine hydrolase, at 311,482 to 312,915
_RS01375
Position (kb) 310
311
312 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 309.434 kb on + strand at 309.649 kb on + strand, within RR42_RS01360 at 309.649 kb on + strand, within RR42_RS01360 at 309.650 kb on - strand, within RR42_RS01360 at 309.650 kb on - strand, within RR42_RS01360 at 309.892 kb on + strand, within RR42_RS01365 at 310.063 kb on + strand, within RR42_RS01365 at 310.194 kb on + strand, within RR42_RS01365 at 310.195 kb on - strand, within RR42_RS01365 at 310.203 kb on + strand, within RR42_RS01365 at 310.204 kb on - strand, within RR42_RS01365 at 310.219 kb on + strand, within RR42_RS01365 at 310.338 kb on + strand at 310.339 kb on - strand at 310.339 kb on - strand at 310.343 kb on - strand at 310.351 kb on - strand at 310.355 kb on - strand at 310.362 kb on + strand at 310.363 kb on - strand at 310.363 kb on - strand at 310.367 kb on - strand at 311.259 kb on + strand at 311.259 kb on + strand at 311.358 kb on + strand at 311.358 kb on + strand at 311.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 309,434 + -0.3 309,649 + RR42_RS01360 0.59 -1.3 309,649 + RR42_RS01360 0.59 +1.1 309,650 - RR42_RS01360 0.59 -1.8 309,650 - RR42_RS01360 0.59 -0.5 309,892 + RR42_RS01365 0.14 +1.1 310,063 + RR42_RS01365 0.53 +0.1 310,194 + RR42_RS01365 0.82 -2.4 310,195 - RR42_RS01365 0.83 -1.6 310,203 + RR42_RS01365 0.84 +0.2 310,204 - RR42_RS01365 0.85 -0.3 310,219 + RR42_RS01365 0.88 -1.4 310,338 + -0.6 310,339 - -1.8 310,339 - -0.1 310,343 - +0.3 310,351 - -3.0 310,355 - -1.1 310,362 + -0.0 310,363 - -0.6 310,363 - +0.5 310,367 - +0.6 311,259 + +0.6 311,259 + +0.0 311,358 + -4.0 311,358 + -2.0 311,358 + -2.1
Or see this region's nucleotide sequence