Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01335 and RR42_RS01340 are separated by 39 nucleotides RR42_RS01340 and RR42_RS01345 are separated by 1 nucleotides
RR42_RS01335: RR42_RS01335 - methylmalonyl-CoA carboxyltransferase, at 302,988 to 304,535
_RS01335
RR42_RS01340: RR42_RS01340 - hypothetical protein, at 304,575 to 305,597
_RS01340
RR42_RS01345: RR42_RS01345 - CoA-binding protein, at 305,599 to 307,710
_RS01345
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 303.619 kb on + strand, within RR42_RS01335 at 303.620 kb on - strand, within RR42_RS01335 at 303.656 kb on + strand, within RR42_RS01335 at 303.733 kb on - strand, within RR42_RS01335 at 303.844 kb on - strand, within RR42_RS01335 at 303.844 kb on - strand, within RR42_RS01335 at 304.161 kb on + strand, within RR42_RS01335 at 304.235 kb on + strand, within RR42_RS01335 at 304.236 kb on - strand, within RR42_RS01335 at 304.236 kb on - strand, within RR42_RS01335 at 304.236 kb on - strand, within RR42_RS01335 at 304.317 kb on + strand, within RR42_RS01335 at 304.317 kb on + strand, within RR42_RS01335 at 304.317 kb on + strand, within RR42_RS01335 at 304.318 kb on - strand, within RR42_RS01335 at 304.568 kb on + strand at 304.568 kb on + strand at 304.569 kb on - strand at 304.569 kb on - strand at 304.569 kb on - strand at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.120 kb on + strand, within RR42_RS01340 at 305.121 kb on - strand, within RR42_RS01340 at 305.168 kb on + strand, within RR42_RS01340 at 305.175 kb on + strand, within RR42_RS01340 at 305.175 kb on + strand, within RR42_RS01340 at 305.176 kb on - strand, within RR42_RS01340 at 305.361 kb on + strand, within RR42_RS01340 at 305.388 kb on + strand, within RR42_RS01340 at 305.388 kb on + strand, within RR42_RS01340 at 305.388 kb on + strand, within RR42_RS01340 at 305.389 kb on - strand, within RR42_RS01340 at 305.389 kb on - strand, within RR42_RS01340 at 305.695 kb on + strand at 305.696 kb on - strand at 305.696 kb on - strand at 305.696 kb on - strand at 305.728 kb on + strand at 305.893 kb on + strand, within RR42_RS01345 at 305.893 kb on + strand, within RR42_RS01345 at 305.893 kb on + strand, within RR42_RS01345 at 305.894 kb on - strand, within RR42_RS01345 at 305.994 kb on + strand, within RR42_RS01345 at 305.995 kb on - strand, within RR42_RS01345 at 306.158 kb on - strand, within RR42_RS01345 at 306.160 kb on - strand, within RR42_RS01345 at 306.250 kb on + strand, within RR42_RS01345 at 306.251 kb on - strand, within RR42_RS01345 at 306.487 kb on - strand, within RR42_RS01345 at 306.551 kb on + strand, within RR42_RS01345 at 306.552 kb on - strand, within RR42_RS01345
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 303,619 + RR42_RS01335 0.41 +1.6 303,620 - RR42_RS01335 0.41 -1.0 303,656 + RR42_RS01335 0.43 -0.5 303,733 - RR42_RS01335 0.48 -1.9 303,844 - RR42_RS01335 0.55 +0.2 303,844 - RR42_RS01335 0.55 +0.8 304,161 + RR42_RS01335 0.76 -0.2 304,235 + RR42_RS01335 0.81 -0.0 304,236 - RR42_RS01335 0.81 -1.5 304,236 - RR42_RS01335 0.81 -1.0 304,236 - RR42_RS01335 0.81 +0.4 304,317 + RR42_RS01335 0.86 +0.3 304,317 + RR42_RS01335 0.86 +0.4 304,317 + RR42_RS01335 0.86 +0.9 304,318 - RR42_RS01335 0.86 -0.2 304,568 + -0.6 304,568 + -1.0 304,569 - -0.3 304,569 - +0.6 304,569 - +1.9 305,120 + RR42_RS01340 0.53 -0.2 305,120 + RR42_RS01340 0.53 +1.3 305,120 + RR42_RS01340 0.53 -0.1 305,120 + RR42_RS01340 0.53 -0.1 305,120 + RR42_RS01340 0.53 -0.2 305,121 - RR42_RS01340 0.53 -0.3 305,168 + RR42_RS01340 0.58 +1.1 305,175 + RR42_RS01340 0.59 -1.2 305,175 + RR42_RS01340 0.59 +1.2 305,176 - RR42_RS01340 0.59 -0.3 305,361 + RR42_RS01340 0.77 -0.3 305,388 + RR42_RS01340 0.79 +0.2 305,388 + RR42_RS01340 0.79 +0.2 305,388 + RR42_RS01340 0.79 +0.1 305,389 - RR42_RS01340 0.80 -0.0 305,389 - RR42_RS01340 0.80 -0.7 305,695 + -3.2 305,696 - -0.7 305,696 - -0.7 305,696 - -2.8 305,728 + -0.7 305,893 + RR42_RS01345 0.14 -0.1 305,893 + RR42_RS01345 0.14 -0.2 305,893 + RR42_RS01345 0.14 -0.4 305,894 - RR42_RS01345 0.14 +0.0 305,994 + RR42_RS01345 0.19 -1.0 305,995 - RR42_RS01345 0.19 -1.7 306,158 - RR42_RS01345 0.26 +0.1 306,160 - RR42_RS01345 0.27 +1.1 306,250 + RR42_RS01345 0.31 -2.1 306,251 - RR42_RS01345 0.31 +0.6 306,487 - RR42_RS01345 0.42 +0.6 306,551 + RR42_RS01345 0.45 -1.7 306,552 - RR42_RS01345 0.45 -0.4
Or see this region's nucleotide sequence