Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01185 and RR42_RS01190 are separated by 246 nucleotides RR42_RS01190 and RR42_RS01195 are separated by 75 nucleotides RR42_RS01195 and RR42_RS01200 are separated by 64 nucleotides
RR42_RS01185: RR42_RS01185 - muropeptide transporter, at 271,272 to 272,528
_RS01185
RR42_RS01190: RR42_RS01190 - peptidase M48, at 272,775 to 273,722
_RS01190
RR42_RS01195: RR42_RS01195 - excinuclease ATPase, at 273,798 to 274,271
_RS01195
RR42_RS01200: RR42_RS01200 - hypothetical protein, at 274,336 to 275,145
_RS01200
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 271.826 kb on - strand, within RR42_RS01185 at 271.996 kb on + strand, within RR42_RS01185 at 271.997 kb on - strand, within RR42_RS01185 at 271.997 kb on - strand, within RR42_RS01185 at 272.134 kb on + strand, within RR42_RS01185 at 272.135 kb on - strand, within RR42_RS01185 at 272.166 kb on + strand, within RR42_RS01185 at 272.166 kb on + strand, within RR42_RS01185 at 272.166 kb on + strand, within RR42_RS01185 at 272.167 kb on - strand, within RR42_RS01185 at 272.309 kb on + strand, within RR42_RS01185 at 272.310 kb on - strand, within RR42_RS01185 at 272.312 kb on - strand, within RR42_RS01185 at 272.312 kb on - strand, within RR42_RS01185 at 272.348 kb on + strand, within RR42_RS01185 at 272.348 kb on + strand, within RR42_RS01185 at 272.348 kb on + strand, within RR42_RS01185 at 272.349 kb on - strand, within RR42_RS01185 at 272.349 kb on - strand, within RR42_RS01185 at 272.349 kb on - strand, within RR42_RS01185 at 272.349 kb on - strand, within RR42_RS01185 at 272.349 kb on - strand, within RR42_RS01185 at 272.350 kb on + strand, within RR42_RS01185 at 272.350 kb on + strand, within RR42_RS01185 at 272.350 kb on + strand, within RR42_RS01185 at 272.350 kb on + strand, within RR42_RS01185 at 272.351 kb on - strand, within RR42_RS01185 at 272.351 kb on - strand, within RR42_RS01185 at 272.351 kb on - strand, within RR42_RS01185 at 272.513 kb on - strand at 272.604 kb on - strand at 272.604 kb on - strand at 272.607 kb on - strand at 272.607 kb on - strand at 272.607 kb on - strand at 272.615 kb on - strand at 272.615 kb on - strand at 272.687 kb on - strand at 272.958 kb on + strand, within RR42_RS01190 at 273.168 kb on + strand, within RR42_RS01190 at 273.168 kb on + strand, within RR42_RS01190 at 273.168 kb on + strand, within RR42_RS01190 at 273.168 kb on + strand, within RR42_RS01190 at 273.169 kb on - strand, within RR42_RS01190 at 273.344 kb on + strand, within RR42_RS01190 at 273.345 kb on - strand, within RR42_RS01190 at 273.345 kb on - strand, within RR42_RS01190 at 273.345 kb on - strand at 273.345 kb on - strand, within RR42_RS01190 at 273.447 kb on + strand, within RR42_RS01190 at 273.653 kb on + strand at 273.713 kb on - strand at 273.720 kb on + strand at 273.759 kb on - strand at 273.759 kb on - strand at 273.763 kb on + strand at 273.763 kb on + strand at 273.764 kb on - strand at 273.764 kb on - strand at 273.767 kb on + strand at 273.767 kb on + strand at 274.200 kb on + strand, within RR42_RS01195 at 274.200 kb on + strand, within RR42_RS01195 at 274.201 kb on - strand, within RR42_RS01195 at 274.224 kb on + strand at 274.305 kb on - strand at 274.305 kb on - strand at 274.305 kb on - strand at 274.305 kb on - strand at 274.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 271,826 - RR42_RS01185 0.44 +0.7 271,996 + RR42_RS01185 0.58 +0.9 271,997 - RR42_RS01185 0.58 +1.1 271,997 - RR42_RS01185 0.58 +0.3 272,134 + RR42_RS01185 0.69 +1.9 272,135 - RR42_RS01185 0.69 +0.9 272,166 + RR42_RS01185 0.71 +0.1 272,166 + RR42_RS01185 0.71 +0.3 272,166 + RR42_RS01185 0.71 +1.8 272,167 - RR42_RS01185 0.71 +2.4 272,309 + RR42_RS01185 0.82 +1.6 272,310 - RR42_RS01185 0.83 +1.4 272,312 - RR42_RS01185 0.83 +1.7 272,312 - RR42_RS01185 0.83 +0.1 272,348 + RR42_RS01185 0.86 +1.3 272,348 + RR42_RS01185 0.86 +0.6 272,348 + RR42_RS01185 0.86 +1.3 272,349 - RR42_RS01185 0.86 +0.7 272,349 - RR42_RS01185 0.86 +2.8 272,349 - RR42_RS01185 0.86 +1.0 272,349 - RR42_RS01185 0.86 +1.2 272,349 - RR42_RS01185 0.86 -2.2 272,350 + RR42_RS01185 0.86 -1.2 272,350 + RR42_RS01185 0.86 -0.1 272,350 + RR42_RS01185 0.86 +1.1 272,350 + RR42_RS01185 0.86 +0.6 272,351 - RR42_RS01185 0.86 +0.9 272,351 - RR42_RS01185 0.86 +1.4 272,351 - RR42_RS01185 0.86 +0.7 272,513 - -2.6 272,604 - -0.1 272,604 - -1.1 272,607 - -1.0 272,607 - -0.6 272,607 - -0.4 272,615 - +1.0 272,615 - -1.6 272,687 - -0.0 272,958 + RR42_RS01190 0.19 +1.1 273,168 + RR42_RS01190 0.41 +0.0 273,168 + RR42_RS01190 0.41 -0.2 273,168 + RR42_RS01190 0.41 -1.4 273,168 + RR42_RS01190 0.41 +1.0 273,169 - RR42_RS01190 0.42 -0.2 273,344 + RR42_RS01190 0.60 -0.6 273,345 - RR42_RS01190 0.60 -0.1 273,345 - RR42_RS01190 0.60 -0.9 273,345 - +0.4 273,345 - RR42_RS01190 0.60 +0.3 273,447 + RR42_RS01190 0.71 +0.4 273,653 + +0.5 273,713 - -0.8 273,720 + -0.5 273,759 - -2.7 273,759 - +0.3 273,763 + +0.2 273,763 + -0.1 273,764 - -0.3 273,764 - +0.6 273,767 + +0.4 273,767 + -0.7 274,200 + RR42_RS01195 0.85 -0.2 274,200 + RR42_RS01195 0.85 +0.0 274,201 - RR42_RS01195 0.85 +0.6 274,224 + +0.8 274,305 - +0.1 274,305 - +0.3 274,305 - +0.6 274,305 - -0.2 274,305 - +0.4
Or see this region's nucleotide sequence