Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01065 and RR42_RS01070 are separated by 79 nucleotides RR42_RS01070 and RR42_RS01075 are separated by 294 nucleotides RR42_RS01075 and RR42_RS01080 are separated by 259 nucleotides RR42_RS01080 and RR42_RS01085 are separated by 23 nucleotides
RR42_RS01065: RR42_RS01065 - ATP-dependent protease ATP-binding subunit HslU, at 250,274 to 251,605
_RS01065
RR42_RS01070: RR42_RS01070 - nuclear export factor GLE1, at 251,685 to 252,197
_RS01070
RR42_RS01075: RR42_RS01075 - hypothetical protein, at 252,492 to 253,073
_RS01075
RR42_RS01080: RR42_RS01080 - hypothetical protein, at 253,333 to 253,629
_RS01080
RR42_RS01085: RR42_RS01085 - chemotaxis protein CheY, at 253,653 to 254,276
_RS01085
Position (kb) 252
253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 251.543 kb on + strand at 251.543 kb on + strand at 251.544 kb on - strand at 251.594 kb on + strand at 251.594 kb on + strand at 251.603 kb on + strand at 251.603 kb on + strand at 251.833 kb on + strand, within RR42_RS01070 at 251.833 kb on + strand, within RR42_RS01070 at 251.834 kb on - strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.962 kb on + strand, within RR42_RS01070 at 251.963 kb on - strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.115 kb on + strand, within RR42_RS01070 at 252.266 kb on - strand at 252.393 kb on - strand at 252.393 kb on - strand at 252.399 kb on + strand at 252.399 kb on + strand at 252.400 kb on - strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.403 kb on + strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.404 kb on - strand at 252.594 kb on + strand, within RR42_RS01075 at 252.595 kb on - strand, within RR42_RS01075 at 252.627 kb on + strand, within RR42_RS01075 at 252.627 kb on + strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.628 kb on - strand, within RR42_RS01075 at 252.795 kb on + strand, within RR42_RS01075 at 252.796 kb on - strand, within RR42_RS01075 at 252.853 kb on + strand, within RR42_RS01075 at 252.853 kb on + strand, within RR42_RS01075 at 252.854 kb on - strand, within RR42_RS01075 at 252.985 kb on - strand, within RR42_RS01075 at 252.985 kb on - strand, within RR42_RS01075 at 252.985 kb on - strand, within RR42_RS01075 at 253.034 kb on + strand at 253.034 kb on + strand at 253.034 kb on + strand at 253.035 kb on - strand at 253.035 kb on - strand at 253.062 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.071 kb on + strand at 253.072 kb on - strand at 253.072 kb on - strand at 253.158 kb on + strand at 253.159 kb on - strand at 253.172 kb on - strand at 253.205 kb on + strand at 253.205 kb on + strand at 253.206 kb on - strand at 253.206 kb on - strand at 253.206 kb on - strand at 253.216 kb on - strand at 253.346 kb on + strand at 253.346 kb on + strand at 253.346 kb on + strand at 253.346 kb on + strand at 253.347 kb on - strand at 253.347 kb on - strand at 253.347 kb on - strand at 253.425 kb on - strand, within RR42_RS01080 at 253.609 kb on + strand at 253.609 kb on + strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.610 kb on - strand at 253.637 kb on + strand at 253.638 kb on - strand at 253.654 kb on + strand at 253.655 kb on - strand at 253.706 kb on + strand at 253.706 kb on + strand at 253.706 kb on + strand at 253.706 kb on + strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.707 kb on - strand at 253.733 kb on + strand, within RR42_RS01085 at 253.733 kb on + strand, within RR42_RS01085 at 253.733 kb on + strand, within RR42_RS01085 at 253.733 kb on + strand, within RR42_RS01085 at 253.734 kb on - strand, within RR42_RS01085 at 253.894 kb on + strand, within RR42_RS01085 at 253.895 kb on - strand, within RR42_RS01085 at 253.895 kb on - strand, within RR42_RS01085 at 253.945 kb on + strand, within RR42_RS01085 at 253.945 kb on + strand, within RR42_RS01085
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 251,543 + +1.5 251,543 + -0.0 251,544 - -2.2 251,594 + -0.2 251,594 + +0.4 251,603 + -0.9 251,603 + +1.1 251,833 + RR42_RS01070 0.29 +0.4 251,833 + RR42_RS01070 0.29 -0.1 251,834 - RR42_RS01070 0.29 -0.2 251,962 + RR42_RS01070 0.54 +1.1 251,962 + RR42_RS01070 0.54 +0.5 251,962 + RR42_RS01070 0.54 +0.4 251,963 - RR42_RS01070 0.54 -1.6 252,115 + RR42_RS01070 0.84 -0.7 252,115 + RR42_RS01070 0.84 -1.6 252,115 + RR42_RS01070 0.84 +0.4 252,266 - +1.1 252,393 - +2.2 252,393 - +1.0 252,399 + -0.0 252,399 + -0.7 252,400 - +2.3 252,403 + -0.1 252,403 + -2.0 252,403 + +0.1 252,403 + -0.6 252,403 + +0.5 252,403 + +0.3 252,403 + -0.4 252,403 + -0.3 252,403 + +0.3 252,404 - +0.0 252,404 - +1.3 252,404 - +0.2 252,404 - -0.4 252,404 - +0.1 252,404 - +0.2 252,404 - -1.4 252,404 - +0.3 252,594 + RR42_RS01075 0.18 -1.5 252,595 - RR42_RS01075 0.18 +0.5 252,627 + RR42_RS01075 0.23 -0.6 252,627 + RR42_RS01075 0.23 +0.2 252,628 - RR42_RS01075 0.23 -1.7 252,628 - RR42_RS01075 0.23 +0.4 252,628 - RR42_RS01075 0.23 +0.6 252,628 - RR42_RS01075 0.23 -0.2 252,795 + RR42_RS01075 0.52 +4.7 252,796 - RR42_RS01075 0.52 -2.1 252,853 + RR42_RS01075 0.62 -0.2 252,853 + RR42_RS01075 0.62 -1.6 252,854 - RR42_RS01075 0.62 -1.1 252,985 - RR42_RS01075 0.85 +0.6 252,985 - RR42_RS01075 0.85 +1.7 252,985 - RR42_RS01075 0.85 -0.2 253,034 + +0.1 253,034 + -0.5 253,034 + +0.7 253,035 - -0.8 253,035 - -1.6 253,062 + -1.0 253,071 + +0.6 253,071 + +0.2 253,071 + -0.2 253,071 + +0.0 253,071 + +1.1 253,072 - +0.1 253,072 - +0.2 253,158 + -3.4 253,159 - -0.3 253,172 - -1.2 253,205 + -2.4 253,205 + -2.2 253,206 - +0.4 253,206 - +2.3 253,206 - +0.9 253,216 - +0.8 253,346 + -0.4 253,346 + -1.2 253,346 + -0.5 253,346 + +0.6 253,347 - +0.7 253,347 - +0.3 253,347 - +1.1 253,425 - RR42_RS01080 0.31 -0.6 253,609 + -0.8 253,609 + -1.6 253,610 - +1.0 253,610 - -1.4 253,610 - -0.5 253,610 - +1.1 253,610 - +0.3 253,637 + -2.3 253,638 - +2.3 253,654 + -1.6 253,655 - -0.0 253,706 + +0.8 253,706 + -1.9 253,706 + -0.5 253,706 + +0.2 253,707 - +0.6 253,707 - -0.3 253,707 - +1.4 253,707 - -0.6 253,707 - -1.8 253,707 - +0.8 253,733 + RR42_RS01085 0.13 +1.2 253,733 + RR42_RS01085 0.13 -0.6 253,733 + RR42_RS01085 0.13 +0.4 253,733 + RR42_RS01085 0.13 +0.2 253,734 - RR42_RS01085 0.13 +0.1 253,894 + RR42_RS01085 0.39 +0.1 253,895 - RR42_RS01085 0.39 +1.1 253,895 - RR42_RS01085 0.39 +1.0 253,945 + RR42_RS01085 0.47 +0.9 253,945 + RR42_RS01085 0.47 +0.1
Or see this region's nucleotide sequence