Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00540

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
142,026	-		RR42_RS00535	0.75	+1.6
142,219	-		RR42_RS00535	0.80	+0.9
142,486	-		RR42_RS00535	0.88	-2.5
142,624	-				-0.6
142,734	+				-0.9
142,735	-				+0.4
142,735	-				-0.9
142,760	+				-0.2
142,760	+				+0.6
142,761	-				-1.3
142,764	+				-0.2
142,764	+				+0.6
142,764	+				-1.1
142,764	+				-0.2
142,764	+				-1.4
142,764	+				-1.3
142,764	+				+0.7
142,765	-				-2.3
142,765	-				+1.1
142,788	+				-0.6
143,091	+				+2.4
143,092	-				-1.5
143,171	+				-0.4
143,171	+				-0.2
143,172	-				-1.6
143,172	-				-0.4
143,172	-				-0.6
143,324	+		RR42_RS00540	0.14	-0.0
143,324	+		RR42_RS00540	0.14	-1.2
143,324	+		RR42_RS00540	0.14	+0.8
143,325	-		RR42_RS00540	0.15	-0.6
143,325	-		RR42_RS00540	0.15	+1.4
143,412	-		RR42_RS00540	0.18	-1.0
143,412	-		RR42_RS00540	0.18	-2.4
143,464	+		RR42_RS00540	0.20	+2.4
143,464	+		RR42_RS00540	0.20	-0.8
143,465	-		RR42_RS00540	0.20	-2.3
143,465	-		RR42_RS00540	0.20	-2.2
143,465	-		RR42_RS00540	0.20	-0.4
143,525	+		RR42_RS00540	0.22	-0.2
143,729	+		RR42_RS00540	0.30	+2.4
143,730	-		RR42_RS00540	0.30	+0.5
143,732	-		RR42_RS00540	0.30	-0.0
143,741	+		RR42_RS00540	0.30	-1.6
143,742	-		RR42_RS00540	0.30	-2.1
143,825	+		RR42_RS00540	0.33	+1.4
143,825	+		RR42_RS00540	0.33	+0.4
143,826	-		RR42_RS00540	0.33	+0.4
143,826	-		RR42_RS00540	0.33	+0.6
143,889	-		RR42_RS00540	0.36	-0.3
143,889	-		RR42_RS00540	0.36	-2.2
144,158	+		RR42_RS00540	0.46	-1.3
144,323	-		RR42_RS00540	0.52	+1.0
144,353	+		RR42_RS00540	0.53	+0.4
144,353	+		RR42_RS00540	0.53	-0.0
144,353	+		RR42_RS00540	0.53	+0.4
144,354	-		RR42_RS00540	0.53	-1.0
144,633	+		RR42_RS00540	0.64	-0.3
144,633	+		RR42_RS00540	0.64	-0.2
144,634	-		RR42_RS00540	0.64	-1.6
144,634	-		RR42_RS00540	0.64	+0.4
144,852	+		RR42_RS00540	0.72	-0.1
144,853	-		RR42_RS00540	0.72	-0.3
144,989	+		RR42_RS00540	0.77	+0.1
144,990	-		RR42_RS00540	0.77	-1.6
144,990	-		RR42_RS00540	0.77	-1.8
144,990	-		RR42_RS00540	0.77	-1.6
144,990	-		RR42_RS00540	0.77	-0.2
144,990	-		RR42_RS00540	0.77	-1.0
145,469	+				-0.0
145,469	+				+1.4
145,469	+				-0.2
145,488	+				-0.2
145,705	+				-1.3
145,705	+				-0.9
145,705	+				-0.0
145,706	-				-1.2
145,706	-				+0.9
145,706	-				-0.0
145,711	+				-0.1
145,712	-				-2.3
145,862	-		RR42_RS00545	0.21	-0.5
145,862	-		RR42_RS00545	0.21	-1.5
145,888	+		RR42_RS00545	0.24	+1.2
145,888	+		RR42_RS00545	0.24	-2.3
145,889	-		RR42_RS00545	0.24	+2.8
146,162	-		RR42_RS00545	0.55	+0.7
146,288	-		RR42_RS00545	0.70	-1.6
146,465	-		RR42_RS00545	0.90	-1.3
146,466	+				-0.3
146,467	-				-1.8
146,551	+				+0.4
146,552	-				-0.2