Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00325

Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00320 and RR42_RS00325 are separated by 624 nucleotidesRR42_RS00325 and RR42_RS00330 are separated by 78 nucleotidesRR42_RS00330 and RR42_RS00335 are separated by 95 nucleotides RR42_RS00320: RR42_RS00320 - histidine kinase, at 89,836 to 90,285 _RS00320 RR42_RS00325: RR42_RS00325 - MFS transporter, at 90,910 to 92,400 _RS00325 RR42_RS00330: RR42_RS00330 - glutathione peroxidase, at 92,479 to 93,117 _RS00330 RR42_RS00335: RR42_RS00335 - MBL fold metallo-hydrolase, at 93,213 to 94,004 _RS00335 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 89.911 kb on + strand, within RR42_RS00320at 89.911 kb on + strand, within RR42_RS00320at 89.911 kb on + strand, within RR42_RS00320at 89.912 kb on - strand, within RR42_RS00320at 89.912 kb on - strand, within RR42_RS00320at 89.912 kb on - strand, within RR42_RS00320at 90.004 kb on + strand, within RR42_RS00320at 90.005 kb on - strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.082 kb on + strand, within RR42_RS00320at 90.083 kb on - strand, within RR42_RS00320at 90.083 kb on - strand, within RR42_RS00320at 90.083 kb on - strand, within RR42_RS00320at 90.102 kb on + strand, within RR42_RS00320at 90.103 kb on - strand, within RR42_RS00320at 90.103 kb on - strand, within RR42_RS00320at 90.211 kb on - strand, within RR42_RS00320at 90.211 kb on - strand, within RR42_RS00320at 90.213 kb on + strand, within RR42_RS00320at 90.213 kb on + strand, within RR42_RS00320at 90.214 kb on - strand, within RR42_RS00320at 90.253 kb on + strandat 90.253 kb on + strandat 90.254 kb on - strandat 90.254 kb on - strandat 90.254 kb on - strandat 90.589 kb on - strandat 90.589 kb on - strandat 90.589 kb on - strandat 90.610 kb on - strandat 90.742 kb on + strandat 90.743 kb on - strandat 90.800 kb on + strandat 91.043 kb on - strandat 91.043 kb on - strandat 91.043 kb on - strandat 91.076 kb on - strand, within RR42_RS00325at 91.076 kb on - strand, within RR42_RS00325at 91.092 kb on + strand, within RR42_RS00325at 91.096 kb on + strand, within RR42_RS00325at 91.096 kb on + strand, within RR42_RS00325at 91.096 kb on + strand, within RR42_RS00325at 91.096 kb on + strand, within RR42_RS00325at 91.096 kb on + strand, within RR42_RS00325at 91.097 kb on - strand, within RR42_RS00325at 91.097 kb on - strand, within RR42_RS00325at 91.097 kb on - strand, within RR42_RS00325at 91.097 kb on - strand, within RR42_RS00325at 91.097 kb on - strand, within RR42_RS00325at 91.097 kb on - strand, within RR42_RS00325at 91.097 kb on - strand, within RR42_RS00325at 91.295 kb on - strand, within RR42_RS00325at 91.295 kb on - strand, within RR42_RS00325at 91.427 kb on - strand, within RR42_RS00325at 91.436 kb on + strand, within RR42_RS00325at 91.437 kb on - strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.549 kb on + strand, within RR42_RS00325at 91.550 kb on - strand, within RR42_RS00325at 91.550 kb on - strand, within RR42_RS00325at 91.678 kb on + strand, within RR42_RS00325at 91.678 kb on + strand, within RR42_RS00325at 91.678 kb on + strand, within RR42_RS00325at 91.678 kb on + strand, within RR42_RS00325at 91.679 kb on - strand, within RR42_RS00325at 91.679 kb on - strand, within RR42_RS00325at 91.679 kb on - strand, within RR42_RS00325at 91.719 kb on + strand, within RR42_RS00325at 91.719 kb on + strand, within RR42_RS00325at 91.720 kb on - strand, within RR42_RS00325at 92.078 kb on + strand, within RR42_RS00325at 92.078 kb on + strand, within RR42_RS00325at 92.079 kb on - strand, within RR42_RS00325at 92.425 kb on + strandat 92.426 kb on - strandat 92.426 kb on - strandat 92.449 kb on + strandat 92.449 kb on + strandat 92.730 kb on + strand, within RR42_RS00330at 92.740 kb on + strand, within RR42_RS00330at 92.740 kb on + strand, within RR42_RS00330at 92.740 kb on + strand, within RR42_RS00330at 92.740 kb on + strand, within RR42_RS00330at 92.741 kb on - strand, within RR42_RS00330at 92.741 kb on - strand, within RR42_RS00330at 92.761 kb on + strand, within RR42_RS00330at 92.761 kb on + strand, within RR42_RS00330at 92.762 kb on - strandat 92.783 kb on - strand, within RR42_RS00330at 92.791 kb on + strand, within RR42_RS00330at 92.792 kb on - strand, within RR42_RS00330at 92.792 kb on - strand, within RR42_RS00330at 92.881 kb on + strand, within RR42_RS00330at 92.881 kb on + strand, within RR42_RS00330at 92.882 kb on - strand, within RR42_RS00330at 92.890 kb on + strand, within RR42_RS00330at 92.890 kb on + strand, within RR42_RS00330at 92.890 kb on + strand, within RR42_RS00330at 92.890 kb on + strand, within RR42_RS00330at 92.891 kb on - strand, within RR42_RS00330at 92.891 kb on - strand, within RR42_RS00330at 92.891 kb on - strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.953 kb on + strand, within RR42_RS00330at 92.954 kb on - strand, within RR42_RS00330at 92.954 kb on - strand, within RR42_RS00330at 92.954 kb on - strand, within RR42_RS00330at 93.001 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.007 kb on + strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.008 kb on - strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.044 kb on - strand, within RR42_RS00330at 93.044 kb on - strand, within RR42_RS00330at 93.044 kb on - strand, within RR42_RS00330at 93.046 kb on - strand, within RR42_RS00330at 93.046 kb on - strand, within RR42_RS00330at 93.116 kb on - strandat 93.183 kb on + strandat 93.184 kb on - strandat 93.226 kb on + strandat 93.226 kb on + strandat 93.228 kb on + strandat 93.229 kb on - strandat 93.229 kb on - strandat 93.366 kb on + strand, within RR42_RS00335at 93.367 kb on - strand, within RR42_RS00335at 93.367 kb on - strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.379 kb on - strand, within RR42_RS00335at 93.379 kb on - strand, within RR42_RS00335at 93.379 kb on - strand, within RR42_RS00335at 93.396 kb on + strand, within RR42_RS00335

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
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89,911 + RR42_RS00320 0.17 -2.1
89,911 + RR42_RS00320 0.17 +1.2
89,911 + RR42_RS00320 0.17 +0.7
89,912 - RR42_RS00320 0.17 -0.3
89,912 - RR42_RS00320 0.17 +0.3
89,912 - RR42_RS00320 0.17 -3.4
90,004 + RR42_RS00320 0.37 +0.7
90,005 - RR42_RS00320 0.38 +2.2
90,082 + RR42_RS00320 0.55 +0.2
90,082 + RR42_RS00320 0.55 +0.4
90,082 + RR42_RS00320 0.55 +0.3
90,082 + RR42_RS00320 0.55 +0.4
90,082 + RR42_RS00320 0.55 +0.2
90,082 + RR42_RS00320 0.55 -0.5
90,082 + RR42_RS00320 0.55 -0.3
90,082 + RR42_RS00320 0.55 -0.9
90,083 - RR42_RS00320 0.55 -0.8
90,083 - RR42_RS00320 0.55 +0.8
90,083 - RR42_RS00320 0.55 -0.4
90,102 + RR42_RS00320 0.59 +1.2
90,103 - RR42_RS00320 0.59 +0.6
90,103 - RR42_RS00320 0.59 -0.8
90,211 - RR42_RS00320 0.83 +1.1
90,211 - RR42_RS00320 0.83 +0.0
90,213 + RR42_RS00320 0.84 -2.9
90,213 + RR42_RS00320 0.84 -0.7
90,214 - RR42_RS00320 0.84 +0.2
90,253 + +0.1
90,253 + -0.3
90,254 - -0.2
90,254 - -0.6
90,254 - +0.4
90,589 - +0.5
90,589 - -1.6
90,589 - -0.7
90,610 - +1.6
90,742 + +0.6
90,743 - +1.0
90,800 + -2.3
91,043 - -2.2
91,043 - -0.1
91,043 - -0.1
91,076 - RR42_RS00325 0.11 -1.3
91,076 - RR42_RS00325 0.11 -1.3
91,092 + RR42_RS00325 0.12 -0.3
91,096 + RR42_RS00325 0.12 -0.2
91,096 + RR42_RS00325 0.12 +0.2
91,096 + RR42_RS00325 0.12 -0.8
91,096 + RR42_RS00325 0.12 -0.2
91,096 + RR42_RS00325 0.12 -0.2
91,097 - RR42_RS00325 0.13 +1.3
91,097 - RR42_RS00325 0.13 -0.2
91,097 - RR42_RS00325 0.13 -0.1
91,097 - RR42_RS00325 0.13 -1.9
91,097 - RR42_RS00325 0.13 +0.3
91,097 - RR42_RS00325 0.13 -0.6
91,097 - RR42_RS00325 0.13 -2.1
91,295 - RR42_RS00325 0.26 +1.3
91,295 - RR42_RS00325 0.26 -1.1
91,427 - RR42_RS00325 0.35 +0.7
91,436 + RR42_RS00325 0.35 +0.3
91,437 - RR42_RS00325 0.35 +0.6
91,549 + RR42_RS00325 0.43 -0.9
91,549 + RR42_RS00325 0.43 +0.3
91,549 + RR42_RS00325 0.43 +0.4
91,549 + RR42_RS00325 0.43 -1.7
91,549 + RR42_RS00325 0.43 -4.1
91,549 + RR42_RS00325 0.43 +0.6
91,549 + RR42_RS00325 0.43 -0.6
91,550 - RR42_RS00325 0.43 +1.1
91,550 - RR42_RS00325 0.43 +0.1
91,678 + RR42_RS00325 0.52 +1.2
91,678 + RR42_RS00325 0.52 +0.0
91,678 + RR42_RS00325 0.52 +0.5
91,678 + RR42_RS00325 0.52 +0.1
91,679 - RR42_RS00325 0.52 -0.3
91,679 - RR42_RS00325 0.52 +1.4
91,679 - RR42_RS00325 0.52 -1.3
91,719 + RR42_RS00325 0.54 -0.1
91,719 + RR42_RS00325 0.54 -3.1
91,720 - RR42_RS00325 0.54 -0.8
92,078 + RR42_RS00325 0.78 -0.6
92,078 + RR42_RS00325 0.78 -0.1
92,079 - RR42_RS00325 0.78 +0.5
92,425 + +1.4
92,426 - -0.7
92,426 - -1.9
92,449 + -2.2
92,449 + +0.1
92,730 + RR42_RS00330 0.39 -1.2
92,740 + RR42_RS00330 0.41 -1.8
92,740 + RR42_RS00330 0.41 -0.6
92,740 + RR42_RS00330 0.41 -0.3
92,740 + RR42_RS00330 0.41 +0.5
92,741 - RR42_RS00330 0.41 +0.3
92,741 - RR42_RS00330 0.41 +0.5
92,761 + RR42_RS00330 0.44 -0.4
92,761 + RR42_RS00330 0.44 -3.7
92,762 - +0.1
92,783 - RR42_RS00330 0.48 -1.7
92,791 + RR42_RS00330 0.49 -0.9
92,792 - RR42_RS00330 0.49 -0.6
92,792 - RR42_RS00330 0.49 -1.0
92,881 + RR42_RS00330 0.63 -0.1
92,881 + RR42_RS00330 0.63 +0.9
92,882 - RR42_RS00330 0.63 -0.0
92,890 + RR42_RS00330 0.64 -0.8
92,890 + RR42_RS00330 0.64 -0.5
92,890 + RR42_RS00330 0.64 -0.4
92,890 + RR42_RS00330 0.64 +0.2
92,891 - RR42_RS00330 0.64 -2.1
92,891 - RR42_RS00330 0.64 +0.9
92,891 - RR42_RS00330 0.64 +0.2
92,953 + RR42_RS00330 0.74 +1.9
92,953 + RR42_RS00330 0.74 +0.5
92,953 + RR42_RS00330 0.74 +1.1
92,953 + RR42_RS00330 0.74 +1.4
92,953 + RR42_RS00330 0.74 +1.0
92,953 + RR42_RS00330 0.74 -3.1
92,954 - RR42_RS00330 0.74 -1.3
92,954 - RR42_RS00330 0.74 +1.4
92,954 - RR42_RS00330 0.74 +1.0
93,001 + RR42_RS00330 0.82 +0.4
93,007 + RR42_RS00330 0.83 -2.2
93,007 + RR42_RS00330 0.83 +0.2
93,007 + RR42_RS00330 0.83 -2.8
93,007 + RR42_RS00330 0.83 +0.4
93,007 + RR42_RS00330 0.83 -0.7
93,007 + RR42_RS00330 0.83 +0.1
93,007 + RR42_RS00330 0.83 +0.2
93,007 + RR42_RS00330 0.83 +0.4
93,008 - RR42_RS00330 0.83 -0.5
93,008 - RR42_RS00330 0.83 +0.8
93,008 - RR42_RS00330 0.83 -0.4
93,008 - RR42_RS00330 0.83 -0.3
93,008 - RR42_RS00330 0.83 -0.7
93,043 + RR42_RS00330 0.88 -0.0
93,043 + RR42_RS00330 0.88 -0.3
93,043 + RR42_RS00330 0.88 +0.1
93,043 + RR42_RS00330 0.88 +0.5
93,044 - RR42_RS00330 0.88 -1.5
93,044 - RR42_RS00330 0.88 +1.6
93,044 - RR42_RS00330 0.88 -0.4
93,046 - RR42_RS00330 0.89 +1.4
93,046 - RR42_RS00330 0.89 -0.8
93,116 - -2.1
93,183 + +0.4
93,184 - +1.7
93,226 + -0.2
93,226 + +0.3
93,228 + +0.0
93,229 - +0.3
93,229 - +0.3
93,366 + RR42_RS00335 0.19 -1.2
93,367 - RR42_RS00335 0.19 -2.1
93,367 - RR42_RS00335 0.19 +0.4
93,378 + RR42_RS00335 0.21 +0.8
93,378 + RR42_RS00335 0.21 -0.5
93,378 + RR42_RS00335 0.21 -1.6
93,378 + RR42_RS00335 0.21 +0.9
93,379 - RR42_RS00335 0.21 -0.0
93,379 - RR42_RS00335 0.21 +0.1
93,379 - RR42_RS00335 0.21 +0.7
93,396 + RR42_RS00335 0.23 -0.9

Or see this region's nucleotide sequence