Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00190 and RR42_RS00195 are separated by 131 nucleotides
RR42_RS00190: RR42_RS00190 - ABC transporter substrate-binding protein, at 62,998 to 64,179
_RS00190
RR42_RS00195: RR42_RS00195 - ABC transporter permease, at 64,311 to 65,240
_RS00195
Position (kb) 62
63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 62.033 kb on + strand at 62.033 kb on + strand at 62.033 kb on + strand at 62.038 kb on - strand at 62.038 kb on - strand at 62.130 kb on + strand at 62.188 kb on - strand at 62.261 kb on + strand at 62.268 kb on - strand at 62.268 kb on - strand at 62.425 kb on + strand at 62.451 kb on + strand at 62.451 kb on + strand at 62.451 kb on + strand at 62.451 kb on + strand at 62.451 kb on + strand at 62.453 kb on + strand at 62.675 kb on + strand at 62.675 kb on + strand at 62.676 kb on - strand at 62.718 kb on + strand at 62.755 kb on + strand at 62.755 kb on + strand at 62.755 kb on + strand at 62.756 kb on - strand at 62.816 kb on - strand at 62.816 kb on - strand at 62.816 kb on - strand at 62.816 kb on - strand at 62.969 kb on - strand at 63.023 kb on + strand at 63.023 kb on + strand at 63.023 kb on + strand at 63.024 kb on - strand at 63.024 kb on - strand at 63.024 kb on - strand at 63.024 kb on - strand at 63.212 kb on - strand, within RR42_RS00190 at 63.212 kb on - strand, within RR42_RS00190 at 63.212 kb on - strand, within RR42_RS00190 at 63.212 kb on - strand, within RR42_RS00190 at 63.217 kb on + strand, within RR42_RS00190 at 63.217 kb on + strand, within RR42_RS00190 at 63.217 kb on + strand, within RR42_RS00190 at 63.218 kb on - strand, within RR42_RS00190 at 63.218 kb on - strand, within RR42_RS00190 at 63.218 kb on - strand, within RR42_RS00190 at 63.218 kb on - strand, within RR42_RS00190 at 63.252 kb on + strand, within RR42_RS00190 at 63.412 kb on + strand, within RR42_RS00190 at 63.413 kb on - strand, within RR42_RS00190 at 63.420 kb on + strand, within RR42_RS00190 at 63.421 kb on - strand, within RR42_RS00190 at 63.421 kb on - strand, within RR42_RS00190 at 63.421 kb on - strand, within RR42_RS00190 at 63.503 kb on - strand, within RR42_RS00190 at 63.553 kb on - strand, within RR42_RS00190 at 63.559 kb on + strand, within RR42_RS00190 at 63.682 kb on + strand, within RR42_RS00190 at 63.683 kb on - strand, within RR42_RS00190 at 63.787 kb on + strand, within RR42_RS00190 at 63.787 kb on + strand, within RR42_RS00190 at 63.787 kb on + strand, within RR42_RS00190 at 63.788 kb on - strand, within RR42_RS00190 at 63.788 kb on - strand, within RR42_RS00190 at 63.835 kb on - strand, within RR42_RS00190 at 63.889 kb on + strand, within RR42_RS00190 at 63.889 kb on + strand, within RR42_RS00190 at 63.890 kb on - strand, within RR42_RS00190 at 63.925 kb on + strand, within RR42_RS00190 at 63.925 kb on + strand, within RR42_RS00190 at 64.099 kb on + strand at 64.099 kb on + strand at 64.099 kb on + strand at 64.099 kb on + strand at 64.100 kb on - strand at 64.100 kb on - strand at 64.100 kb on - strand at 64.100 kb on - strand at 64.144 kb on + strand at 64.178 kb on - strand at 64.329 kb on + strand at 64.330 kb on - strand at 64.363 kb on - strand at 64.385 kb on + strand at 64.385 kb on + strand at 64.472 kb on + strand, within RR42_RS00195 at 64.616 kb on + strand, within RR42_RS00195 at 64.616 kb on + strand, within RR42_RS00195 at 64.617 kb on - strand, within RR42_RS00195 at 64.823 kb on + strand, within RR42_RS00195 at 64.972 kb on - strand, within RR42_RS00195 at 65.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 62,033 + +0.5 62,033 + -0.6 62,033 + +0.7 62,038 - +0.7 62,038 - -0.9 62,130 + +0.1 62,188 - +0.2 62,261 + +0.9 62,268 - -0.3 62,268 - -0.4 62,425 + +0.6 62,451 + +0.5 62,451 + +0.9 62,451 + +0.2 62,451 + +1.0 62,451 + -0.6 62,453 + +0.7 62,675 + -0.4 62,675 + +1.1 62,676 - +0.3 62,718 + -0.8 62,755 + +1.1 62,755 + +0.3 62,755 + +0.8 62,756 - -0.1 62,816 - +0.5 62,816 - +1.0 62,816 - -0.8 62,816 - +0.3 62,969 - -0.9 63,023 + +1.8 63,023 + -0.8 63,023 + -2.9 63,024 - +0.4 63,024 - -0.7 63,024 - +1.6 63,024 - +1.6 63,212 - RR42_RS00190 0.18 +0.8 63,212 - RR42_RS00190 0.18 -0.5 63,212 - RR42_RS00190 0.18 -0.7 63,212 - RR42_RS00190 0.18 -3.7 63,217 + RR42_RS00190 0.19 -0.2 63,217 + RR42_RS00190 0.19 +1.9 63,217 + RR42_RS00190 0.19 -1.1 63,218 - RR42_RS00190 0.19 -0.1 63,218 - RR42_RS00190 0.19 -0.2 63,218 - RR42_RS00190 0.19 -1.3 63,218 - RR42_RS00190 0.19 +0.1 63,252 + RR42_RS00190 0.21 -0.0 63,412 + RR42_RS00190 0.35 +1.1 63,413 - RR42_RS00190 0.35 +0.5 63,420 + RR42_RS00190 0.36 -0.8 63,421 - RR42_RS00190 0.36 +0.4 63,421 - RR42_RS00190 0.36 +1.1 63,421 - RR42_RS00190 0.36 +1.4 63,503 - RR42_RS00190 0.43 -0.2 63,553 - RR42_RS00190 0.47 +1.8 63,559 + RR42_RS00190 0.47 -1.4 63,682 + RR42_RS00190 0.58 -0.2 63,683 - RR42_RS00190 0.58 +1.2 63,787 + RR42_RS00190 0.67 +0.6 63,787 + RR42_RS00190 0.67 -0.1 63,787 + RR42_RS00190 0.67 -0.5 63,788 - RR42_RS00190 0.67 -0.1 63,788 - RR42_RS00190 0.67 +0.4 63,835 - RR42_RS00190 0.71 -0.5 63,889 + RR42_RS00190 0.75 +2.4 63,889 + RR42_RS00190 0.75 -0.2 63,890 - RR42_RS00190 0.75 -0.8 63,925 + RR42_RS00190 0.78 -2.4 63,925 + RR42_RS00190 0.78 +0.2 64,099 + +0.8 64,099 + +0.5 64,099 + -2.1 64,099 + -1.2 64,100 - -2.5 64,100 - -1.8 64,100 - +1.8 64,100 - -2.1 64,144 + +0.0 64,178 - +0.2 64,329 + -0.5 64,330 - -0.3 64,363 - -0.6 64,385 + -3.4 64,385 + -1.1 64,472 + RR42_RS00195 0.17 -1.2 64,616 + RR42_RS00195 0.33 +0.1 64,616 + RR42_RS00195 0.33 -0.3 64,617 - RR42_RS00195 0.33 +1.9 64,823 + RR42_RS00195 0.55 +2.0 64,972 - RR42_RS00195 0.71 +0.7 65,149 - -0.3
Or see this region's nucleotide sequence