Experiment: Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00175 and RR42_RS00180 are separated by 216 nucleotides RR42_RS00180 and RR42_RS00185 are separated by 43 nucleotides
RR42_RS00175: RR42_RS00175 - hypothetical protein, at 59,836 to 60,633
_RS00175
RR42_RS00180: RR42_RS00180 - hypothetical protein, at 60,850 to 61,080
_RS00180
RR42_RS00185: RR42_RS00185 - hypothetical protein, at 61,124 to 61,363
_RS00185
Position (kb) 61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 60.318 kb on + strand, within RR42_RS00175 at 60.358 kb on - strand, within RR42_RS00175 at 60.358 kb on - strand, within RR42_RS00175 at 60.358 kb on - strand, within RR42_RS00175 at 60.453 kb on + strand, within RR42_RS00175 at 60.454 kb on - strand, within RR42_RS00175 at 60.454 kb on - strand, within RR42_RS00175 at 60.454 kb on - strand, within RR42_RS00175 at 60.454 kb on - strand, within RR42_RS00175 at 60.483 kb on + strand, within RR42_RS00175 at 60.514 kb on - strand, within RR42_RS00175 at 60.577 kb on + strand at 60.596 kb on - strand at 60.694 kb on + strand at 60.861 kb on + strand at 60.861 kb on + strand at 60.862 kb on - strand at 60.940 kb on - strand, within RR42_RS00180 at 60.958 kb on + strand, within RR42_RS00180 at 60.995 kb on + strand, within RR42_RS00180 at 60.995 kb on + strand, within RR42_RS00180 at 60.995 kb on + strand, within RR42_RS00180 at 60.996 kb on - strand, within RR42_RS00180 at 61.025 kb on + strand, within RR42_RS00180 at 61.025 kb on + strand, within RR42_RS00180 at 61.136 kb on + strand at 61.136 kb on + strand at 61.137 kb on - strand at 61.137 kb on - strand at 61.152 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.304 kb on + strand, within RR42_RS00185 at 61.305 kb on - strand, within RR42_RS00185 at 61.305 kb on - strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.333 kb on + strand, within RR42_RS00185 at 61.563 kb on + strand at 61.571 kb on + strand at 61.571 kb on + strand at 61.572 kb on - strand at 61.572 kb on - strand at 61.654 kb on + strand at 61.655 kb on - strand at 61.725 kb on - strand at 61.782 kb on + strand at 61.782 kb on + strand at 61.826 kb on + strand at 61.826 kb on + strand at 61.827 kb on - strand at 61.827 kb on - strand at 61.827 kb on - strand at 61.888 kb on + strand at 61.889 kb on - strand at 61.889 kb on - strand at 61.928 kb on - strand at 61.930 kb on + strand at 61.930 kb on + strand at 61.931 kb on - strand at 61.931 kb on - strand at 62.033 kb on + strand at 62.033 kb on + strand at 62.033 kb on + strand at 62.038 kb on - strand at 62.038 kb on - strand at 62.130 kb on + strand at 62.188 kb on - strand at 62.261 kb on + strand at 62.268 kb on - strand at 62.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM remove 60,318 + RR42_RS00175 0.60 -2.2 60,358 - RR42_RS00175 0.65 +1.6 60,358 - RR42_RS00175 0.65 -0.6 60,358 - RR42_RS00175 0.65 -2.2 60,453 + RR42_RS00175 0.77 +0.8 60,454 - RR42_RS00175 0.77 +0.9 60,454 - RR42_RS00175 0.77 -0.1 60,454 - RR42_RS00175 0.77 +1.3 60,454 - RR42_RS00175 0.77 +0.4 60,483 + RR42_RS00175 0.81 -0.0 60,514 - RR42_RS00175 0.85 +1.1 60,577 + +0.1 60,596 - +1.5 60,694 + -0.1 60,861 + +1.7 60,861 + -0.8 60,862 - -0.6 60,940 - RR42_RS00180 0.39 +2.1 60,958 + RR42_RS00180 0.47 +0.1 60,995 + RR42_RS00180 0.63 -0.2 60,995 + RR42_RS00180 0.63 +1.3 60,995 + RR42_RS00180 0.63 +0.9 60,996 - RR42_RS00180 0.63 +0.3 61,025 + RR42_RS00180 0.76 -0.4 61,025 + RR42_RS00180 0.76 -3.4 61,136 + +0.1 61,136 + -0.4 61,137 - +0.1 61,137 - -0.6 61,152 + RR42_RS00185 0.12 +0.2 61,304 + RR42_RS00185 0.75 +0.2 61,304 + RR42_RS00185 0.75 -0.2 61,304 + RR42_RS00185 0.75 +0.7 61,304 + RR42_RS00185 0.75 -0.7 61,304 + RR42_RS00185 0.75 +0.4 61,304 + RR42_RS00185 0.75 -1.2 61,305 - RR42_RS00185 0.75 -1.4 61,305 - RR42_RS00185 0.75 -1.4 61,333 + RR42_RS00185 0.87 +0.3 61,333 + RR42_RS00185 0.87 +0.4 61,333 + RR42_RS00185 0.87 -1.4 61,333 + RR42_RS00185 0.87 -1.6 61,333 + RR42_RS00185 0.87 -0.8 61,563 + -0.9 61,571 + +0.4 61,571 + +0.9 61,572 - -0.3 61,572 - +1.8 61,654 + +1.4 61,655 - -2.9 61,725 - +1.2 61,782 + +1.4 61,782 + +0.2 61,826 + +1.7 61,826 + +0.7 61,827 - -1.4 61,827 - -0.8 61,827 - +1.8 61,888 + +0.9 61,889 - +1.0 61,889 - +0.2 61,928 - +0.6 61,930 + +0.3 61,930 + +2.0 61,931 - +1.1 61,931 - +0.4 62,033 + +0.5 62,033 + -0.6 62,033 + +0.7 62,038 - +0.7 62,038 - -0.9 62,130 + +0.1 62,188 - +0.2 62,261 + +0.9 62,268 - -0.3 62,268 - -0.4
Or see this region's nucleotide sequence