Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23110

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,305,952	+				-0.3
5,306,034	+		HSERO_RS23105	0.10	-0.7
5,306,034	+		HSERO_RS23105	0.10	+1.7
5,306,034	+		HSERO_RS23105	0.10	+1.8
5,306,129	+		HSERO_RS23105	0.20	+0.0
5,306,149	+		HSERO_RS23105	0.22	+0.9
5,306,211	-		HSERO_RS23105	0.29	+0.5
5,306,296	+		HSERO_RS23105	0.38	+0.9
5,306,331	+		HSERO_RS23105	0.42	-0.8
5,306,364	+		HSERO_RS23105	0.45	-0.2
5,306,376	+		HSERO_RS23105	0.47	-1.1
5,306,384	-		HSERO_RS23105	0.48	-0.9
5,306,384	-		HSERO_RS23105	0.48	-1.3
5,306,399	+		HSERO_RS23105	0.49	-0.5
5,306,428	-		HSERO_RS23105	0.52	-0.5
5,306,428	-		HSERO_RS23105	0.52	+0.6
5,306,494	-		HSERO_RS23105	0.59	-0.6
5,306,596	-		HSERO_RS23105	0.70	+0.7
5,306,694	-		HSERO_RS23105	0.81	-2.1
5,306,710	-		HSERO_RS23105	0.83	+0.2
5,306,798	+				-0.4
5,306,806	-				-0.5
5,306,861	+				+1.4
5,306,924	+				-0.6
5,307,187	+		HSERO_RS23110	0.78	-0.6
5,307,279	+				+0.1
5,307,542	+		HSERO_RS23115	0.24	-0.5
5,307,608	+		HSERO_RS23115	0.33	-2.2
5,307,658	-		HSERO_RS23115	0.39	-0.5
5,307,752	+		HSERO_RS23115	0.51	-1.2
5,307,800	-		HSERO_RS23115	0.57	-0.1
5,307,820	-		HSERO_RS23115	0.59	-0.1
5,307,822	+		HSERO_RS23115	0.59	-1.3
5,307,869	-		HSERO_RS23115	0.65	+0.1
5,308,087	+				-0.3
5,308,097	+				+0.8
5,308,107	+				-0.9
5,308,200	+				-0.3
5,308,200	+				+0.2