Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20100

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,610,511	-				-0.6
4,610,694	-		HSERO_RS20095	0.15	-0.7
4,610,709	-				+0.4
4,610,794	-		HSERO_RS20095	0.26	-0.4
4,610,849	+		HSERO_RS20095	0.31	+0.7
4,610,857	-		HSERO_RS20095	0.32	+0.0
4,610,935	+		HSERO_RS20095	0.40	+0.9
4,610,987	+		HSERO_RS20095	0.46	+0.6
4,611,173	+		HSERO_RS20095	0.66	+0.1
4,611,216	-		HSERO_RS20095	0.70	+0.4
4,611,318	+		HSERO_RS20095	0.81	-0.4
4,611,432	+				+0.7
4,611,613	-		HSERO_RS20100	0.12	+1.3
4,611,637	+		HSERO_RS20100	0.15	-1.8
4,611,645	-		HSERO_RS20100	0.16	+0.1
4,611,771	-		HSERO_RS20100	0.29	+0.4
4,611,931	+		HSERO_RS20100	0.46	+0.6
4,611,931	+		HSERO_RS20100	0.46	+0.5
4,611,945	+		HSERO_RS20100	0.47	-0.1
4,612,260	-		HSERO_RS20100	0.80	-0.1
4,612,303	-		HSERO_RS20100	0.85	+0.2
4,612,338	-		HSERO_RS20100	0.89	+0.2
4,612,398	-				+0.9
4,612,418	+				+0.1
4,612,502	+				+0.2
4,612,510	-				-0.1
4,612,590	-				-0.0
4,612,596	+				-0.7
4,612,604	-				+0.6
4,612,604	-				-0.3
4,612,748	-		HSERO_RS20105	0.17	+0.4
4,612,802	-		HSERO_RS20105	0.21	+0.2
4,612,865	-		HSERO_RS20105	0.25	-1.8
4,612,984	+		HSERO_RS20105	0.33	-0.7
4,613,182	+		HSERO_RS20105	0.46	+0.4
4,613,212	-		HSERO_RS20105	0.48	+0.2
4,613,249	+		HSERO_RS20105	0.50	-1.5
4,613,350	+		HSERO_RS20105	0.57	-0.4