Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19105

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,382,042	+		HSERO_RS19100	0.20	-0.4
4,382,203	-		HSERO_RS19100	0.35	+0.5
4,382,398	-		HSERO_RS19100	0.53	-1.5
4,382,550	-		HSERO_RS19100	0.67	-0.5
4,382,559	+		HSERO_RS19100	0.68	-0.4
4,382,580	+		HSERO_RS19100	0.70	-1.1
4,382,580	+		HSERO_RS19100	0.70	-0.5
4,382,693	-		HSERO_RS19100	0.80	+0.6
4,382,723	-		HSERO_RS19100	0.83	+0.8
4,382,788	+		HSERO_RS19100	0.89	-0.3
4,382,910	+				+0.0
4,383,344	-		HSERO_RS19105	0.29	-0.6
4,383,353	+		HSERO_RS19105	0.30	-0.4
4,383,407	+		HSERO_RS19105	0.33	-1.6
4,383,445	+		HSERO_RS19105	0.36	-1.7
4,383,535	+		HSERO_RS19105	0.42	-0.8
4,383,671	+		HSERO_RS19105	0.51	-1.0
4,383,679	-		HSERO_RS19105	0.52	-0.5
4,384,029	+		HSERO_RS19105	0.75	-1.3
4,384,109	-		HSERO_RS19105	0.81	-1.1
4,384,338	+				-1.5
4,384,391	+				-0.9
4,384,439	-				+1.0
4,384,547	-				-0.3
4,384,677	+				+0.7
4,384,677	+				+0.5
4,384,726	+				-0.3
4,384,777	-		HSERO_RS19110	0.14	-1.5
4,384,847	-		HSERO_RS19110	0.22	-0.2
4,384,872	+		HSERO_RS19110	0.24	+0.8
4,384,905	+		HSERO_RS19110	0.28	+0.4
4,384,932	+		HSERO_RS19110	0.31	+0.7
4,384,937	+		HSERO_RS19110	0.32	+0.7
4,385,028	+		HSERO_RS19110	0.42	-0.2
4,385,041	-		HSERO_RS19110	0.43	+0.0
4,385,046	-		HSERO_RS19110	0.44	-0.0
4,385,125	-		HSERO_RS19110	0.53	+0.4
4,385,258	+		HSERO_RS19110	0.68	+0.1
4,385,260	-		HSERO_RS19110	0.68	-0.2
4,385,323	+		HSERO_RS19110	0.75	+0.4
4,385,359	-		HSERO_RS19110	0.79	+1.0