Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17650

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,051,301	-		HSERO_RS17645	0.67	+0.7
4,051,356	+		HSERO_RS17645	0.69	+1.3
4,051,457	-		HSERO_RS17645	0.73	+0.2
4,051,595	+		HSERO_RS17645	0.79	+0.9
4,051,620	+		HSERO_RS17645	0.80	+1.0
4,051,665	+		HSERO_RS17645	0.81	-1.0
4,051,673	-		HSERO_RS17645	0.82	-0.4
4,051,691	-		HSERO_RS17645	0.83	-1.5
4,051,768	+		HSERO_RS17645	0.86	+0.3
4,051,778	+		HSERO_RS17645	0.86	-0.4
4,051,800	+		HSERO_RS17645	0.87	-0.3
4,051,855	+		HSERO_RS17645	0.89	+0.1
4,051,863	-		HSERO_RS17645	0.89	+0.8
4,052,101	+				-0.4
4,052,109	-				+1.1
4,052,399	+		HSERO_RS17650	0.12	+0.7
4,052,546	+		HSERO_RS17650	0.25	+0.0
4,052,554	-		HSERO_RS17650	0.26	-1.5
4,052,582	+		HSERO_RS17650	0.29	-1.2
4,052,773	+		HSERO_RS17650	0.45	+0.3
4,052,773	+		HSERO_RS17650	0.45	-1.3
4,052,781	-		HSERO_RS17650	0.46	-0.1
4,052,972	+		HSERO_RS17650	0.63	-0.8
4,053,106	-		HSERO_RS17650	0.75	-0.3
4,053,106	-		HSERO_RS17650	0.75	-1.4
4,053,109	+		HSERO_RS17650	0.75	-0.3
4,053,109	+		HSERO_RS17650	0.75	+0.0
4,053,263	-		HSERO_RS17650	0.89	-0.3
4,053,509	+				+0.5
4,053,524	-				+0.0
4,053,651	-		HSERO_RS17655	0.12	-0.3
4,053,824	-		HSERO_RS17655	0.20	+0.3
4,053,924	+		HSERO_RS17655	0.25	-0.1
4,054,027	-		HSERO_RS17655	0.30	-2.1
4,054,027	-		HSERO_RS17655	0.30	+1.2
4,054,043	+		HSERO_RS17655	0.31	+0.2
4,054,101	+		HSERO_RS17655	0.34	-0.5
4,054,156	-		HSERO_RS17655	0.37	+0.6
4,054,161	+		HSERO_RS17655	0.37	+0.3
4,054,169	-		HSERO_RS17655	0.37	+0.5
4,054,169	-		HSERO_RS17655	0.37	-0.0
4,054,292	-		HSERO_RS17655	0.43	+0.7