Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16855

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,857,103	+				-2.1
3,857,180	+				-0.4
3,857,252	+				+0.4
3,857,280	+				+1.2
3,857,329	+				+1.0
3,857,405	-		HSERO_RS16850	0.17	-0.0
3,857,421	+		HSERO_RS16850	0.20	+0.4
3,857,449	-		HSERO_RS16850	0.24	+0.4
3,857,486	-		HSERO_RS16850	0.30	-0.3
3,857,512	-		HSERO_RS16850	0.35	-0.4
3,857,728	+		HSERO_RS16850	0.71	+0.1
3,857,822	-		HSERO_RS16850	0.87	+1.5
3,857,970	-				+0.1
3,858,167	-		HSERO_RS16855	0.29	+0.5
3,858,289	+		HSERO_RS16855	0.44	+0.3
3,858,289	+		HSERO_RS16855	0.44	-1.0
3,858,409	-		HSERO_RS16855	0.58	-1.9
3,858,450	-		HSERO_RS16855	0.62	-1.4
3,858,452	+				+0.7
3,858,462	+		HSERO_RS16855	0.64	-0.0
3,858,781	+				+0.4
3,858,876	+		HSERO_RS16860	0.19	+0.9
3,858,879	-		HSERO_RS16860	0.20	-1.2
3,859,057	-		HSERO_RS16860	0.53	-0.4
3,859,106	+		HSERO_RS16860	0.62	-0.1
3,859,308	-				-0.5
3,859,357	-				+0.8
3,859,357	-				-0.5
3,859,444	+		HSERO_RS16865	0.32	+0.8
3,859,636	+				-0.2
3,859,709	-				-0.2