Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15230

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,456,749	+		HSERO_RS15225	0.55	-0.6
3,456,749	+		HSERO_RS15225	0.55	-0.4
3,456,751	+		HSERO_RS15225	0.55	-0.4
3,456,804	+		HSERO_RS15225	0.59	-0.3
3,456,804	+		HSERO_RS15225	0.59	+1.1
3,456,812	-		HSERO_RS15225	0.60	-2.3
3,456,842	+		HSERO_RS15225	0.62	-0.4
3,456,958	-		HSERO_RS15225	0.71	+0.3
3,457,257	+				-0.1
3,457,490	+				+0.6
3,457,493	-				+0.3
3,457,552	-		HSERO_RS15230	0.11	-0.5
3,457,625	-		HSERO_RS15230	0.17	+0.0
3,457,648	-		HSERO_RS15230	0.19	-0.3
3,457,661	-		HSERO_RS15230	0.20	-0.7
3,457,774	-		HSERO_RS15230	0.29	+0.5
3,457,841	+		HSERO_RS15230	0.35	+0.1
3,457,880	+		HSERO_RS15230	0.38	-0.6
3,457,888	-		HSERO_RS15230	0.39	+0.6
3,458,159	+		HSERO_RS15230	0.61	-0.6
3,458,272	-		HSERO_RS15230	0.70	+0.9
3,458,287	+		HSERO_RS15230	0.72	+0.1
3,458,379	+		HSERO_RS15230	0.79	+0.3
3,458,387	-		HSERO_RS15230	0.80	-1.0
3,458,468	-		HSERO_RS15230	0.87	-0.2
3,458,642	+				-1.1
3,458,697	-				+0.1
3,458,747	-				+0.6
3,458,834	-				-0.6
3,458,956	-				+0.7
3,459,252	-				+2.0
3,459,257	-		HSERO_RS15235	0.28	+2.0
3,459,317	+		HSERO_RS15235	0.33	+0.4
3,459,546	+		HSERO_RS15235	0.51	+0.0
3,459,548	+		HSERO_RS15235	0.51	+0.0