Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15220

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,453,540	+		HSERO_RS15215	0.56	+0.1
3,453,608	+		HSERO_RS15215	0.60	+2.0
3,453,616	-		HSERO_RS15215	0.61	+0.5
3,453,725	-		HSERO_RS15215	0.68	-0.4
3,453,802	-		HSERO_RS15215	0.73	-0.7
3,453,832	+		HSERO_RS15215	0.74	-0.7
3,453,840	-		HSERO_RS15215	0.75	+0.2
3,453,939	-		HSERO_RS15215	0.81	-1.3
3,454,075	+		HSERO_RS15215	0.89	+0.2
3,454,098	-				+1.5
3,454,197	+				-0.3
3,454,350	+				+1.3
3,454,350	+				+0.1
3,454,488	+				+0.6
3,454,703	-		HSERO_RS15220	0.17	+0.4
3,454,754	+		HSERO_RS15220	0.21	-0.5
3,454,813	+		HSERO_RS15220	0.25	+0.9
3,454,834	+		HSERO_RS15220	0.27	-1.4
3,454,842	-		HSERO_RS15220	0.27	-0.5
3,455,038	-		HSERO_RS15220	0.41	+0.6
3,455,174	+		HSERO_RS15220	0.51	-0.0
3,455,332	-		HSERO_RS15220	0.62	-1.3
3,455,356	-		HSERO_RS15220	0.64	-0.1
3,455,567	-		HSERO_RS15220	0.79	-0.6
3,455,621	-		HSERO_RS15220	0.82	-0.0
3,455,700	-		HSERO_RS15220	0.88	-2.5
3,455,866	-				-0.2
3,455,889	-				+0.0
3,455,896	-				+0.3
3,455,933	-				-0.0
3,455,941	+				-0.2
3,456,397	+				+1.4
3,456,749	+		HSERO_RS15225	0.55	-0.6
3,456,749	+		HSERO_RS15225	0.55	-0.4
3,456,751	+		HSERO_RS15225	0.55	-0.4
3,456,804	+		HSERO_RS15225	0.59	-0.3
3,456,804	+		HSERO_RS15225	0.59	+1.1
3,456,812	-		HSERO_RS15225	0.60	-2.3
3,456,842	+		HSERO_RS15225	0.62	-0.4