Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14205

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
3,228,686	+		HSERO_RS14200	0.52	-0.2
3,228,686	+		HSERO_RS14200	0.52	+0.4
3,228,686	+		HSERO_RS14200	0.52	-1.2
3,228,993	+		HSERO_RS14200	0.68	-0.5
3,229,229	-		HSERO_RS14200	0.81	+1.0
3,229,274	-		HSERO_RS14200	0.83	-1.1
3,229,417	+				-0.4
3,229,425	-				-0.4
3,229,427	-				-0.0
3,229,561	+				+0.1
3,229,569	-				-0.1
3,229,680	+				-0.1
3,229,724	+				+2.0
3,229,777	-		HSERO_RS14205	0.36	+0.5
3,229,931	+		HSERO_RS14205	0.81	+0.5
3,229,957	+		HSERO_RS14205	0.89	-0.7
3,229,965	-				-0.3
3,229,965	-				+0.2
3,230,059	+				-0.3
3,230,067	-				+0.7
3,230,067	-				+0.1
3,230,219	+				+0.4
3,230,227	-				+0.4
3,230,227	-				-0.3
3,230,227	-				+1.6
3,230,237	+				-0.1
3,230,254	-				-0.5
3,230,370	+		HSERO_RS14210	0.15	-0.2
3,230,651	-		HSERO_RS14210	0.40	+0.2
3,230,804	-		HSERO_RS14210	0.53	-0.6
3,230,836	+		HSERO_RS14210	0.56	+0.1
3,230,841	+		HSERO_RS14210	0.56	-1.0
3,230,849	-		HSERO_RS14210	0.57	+0.3
3,230,908	+		HSERO_RS14210	0.62	-1.3
3,230,940	+		HSERO_RS14210	0.65	-1.2
3,230,940	+		HSERO_RS14210	0.65	+0.0