Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13025

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS13015 and HSERO_RS13020 are separated by 10 nucleotidesHSERO_RS13020 and HSERO_RS13025 are separated by 47 nucleotidesHSERO_RS13025 and HSERO_RS13030 are separated by 143 nucleotides HSERO_RS13015: HSERO_RS13015 - DNA polymerase III subunit delta', at 2,967,838 to 2,968,875 _RS13015 HSERO_RS13020: HSERO_RS13020 - thymidylate kinase, at 2,968,886 to 2,969,494 _RS13020 HSERO_RS13025: HSERO_RS13025 - aminodeoxychorismate lyase, at 2,969,542 to 2,970,522 _RS13025 HSERO_RS13030: HSERO_RS13030 - folate-binding protein, at 2,970,666 to 2,971,748 _RS13030 Position (kb) 2969 2970 2971Strain fitness (log2 ratio) -1 0 1 2at 2968.881 kb on + strandat 2969.527 kb on - strandat 2969.626 kb on + strandat 2969.626 kb on + strandat 2969.774 kb on - strand, within HSERO_RS13025at 2970.344 kb on - strand, within HSERO_RS13025at 2970.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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2,968,881 + +0.2
2,969,527 - -0.6
2,969,626 + +0.8
2,969,626 + +1.8
2,969,774 - HSERO_RS13025 0.24 +1.0
2,970,344 - HSERO_RS13025 0.82 -0.5
2,970,631 - +1.3

Or see this region's nucleotide sequence