Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12610

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,877,165	+		HSERO_RS12605	0.76	+0.2
2,877,190	-		HSERO_RS12605	0.77	+1.2
2,877,295	+		HSERO_RS12605	0.83	-0.5
2,877,295	+		HSERO_RS12605	0.83	+2.0
2,877,357	+		HSERO_RS12605	0.86	-3.1
2,877,365	-		HSERO_RS12605	0.87	-1.6
2,877,685	-		HSERO_RS12610	0.15	-0.7
2,877,834	-		HSERO_RS12610	0.49	+0.7
2,878,040	-				-0.1
2,878,117	-				+0.2
2,878,197	+				+0.0
2,878,291	+		HSERO_RS12615	0.15	+0.0
2,878,350	+		HSERO_RS12615	0.21	-0.2
2,878,374	+		HSERO_RS12615	0.23	-0.2
2,878,380	+		HSERO_RS12615	0.24	+0.3
2,878,787	-		HSERO_RS12615	0.63	-0.5
2,878,865	+		HSERO_RS12615	0.71	-0.0
2,878,950	-		HSERO_RS12615	0.79	-0.3
2,878,953	+		HSERO_RS12615	0.80	+0.7
2,878,961	-		HSERO_RS12615	0.80	-0.2
2,878,971	+				-0.0
2,878,977	+		HSERO_RS12615	0.82	+0.1