Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09795

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,219,171	+		HSERO_RS09790	0.54	+0.5
2,219,296	+		HSERO_RS09790	0.63	+0.0
2,219,619	+		HSERO_RS09790	0.86	-0.3
2,219,634	+		HSERO_RS09790	0.87	-0.3
2,219,763	-				-0.6
2,219,878	-				+0.1
2,219,883	-				+0.3
2,219,901	-				+0.2
2,220,041	-				-0.0
2,220,366	-		HSERO_RS09795	0.16	+0.1
2,220,505	-		HSERO_RS09795	0.22	+0.4
2,220,654	+		HSERO_RS09795	0.30	-0.1
2,220,654	+		HSERO_RS09795	0.30	-1.9
2,220,662	-		HSERO_RS09795	0.30	-1.2
2,220,724	-		HSERO_RS09795	0.33	+0.5
2,220,778	+		HSERO_RS09795	0.36	-0.9
2,220,808	-		HSERO_RS09795	0.37	-0.6
2,220,842	+				+0.4
2,221,054	+		HSERO_RS09795	0.49	-2.0
2,221,206	-		HSERO_RS09795	0.56	-1.9
2,221,653	+		HSERO_RS09795	0.78	-0.7
2,221,653	+		HSERO_RS09795	0.78	+1.0
2,221,709	+		HSERO_RS09795	0.80	-0.1
2,221,719	+				+2.0
2,221,734	+		HSERO_RS09795	0.82	+0.7
2,221,781	+		HSERO_RS09795	0.84	-0.3
2,221,882	+		HSERO_RS09795	0.89	+1.9
2,222,224	-		HSERO_RS09800	0.37	+0.5
2,222,445	+				+0.5
2,222,566	+				+0.2
2,222,696	-				-0.1
2,222,734	+		HSERO_RS09805	0.18	+0.2
2,222,752	-		HSERO_RS09805	0.23	+0.3
2,222,979	+		HSERO_RS09805	0.85	-3.4