Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09730

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,204,548	+		HSERO_RS09725	0.65	-1.9
2,204,563	-		HSERO_RS09725	0.66	-2.4
2,204,758	-		HSERO_RS09725	0.73	+0.0
2,204,973	+		HSERO_RS09725	0.81	-1.2
2,205,034	+		HSERO_RS09725	0.83	-1.6
2,205,062	+		HSERO_RS09725	0.84	-1.4
2,205,110	-		HSERO_RS09725	0.86	-2.9
2,205,297	+				-0.8
2,205,517	-				-2.7
2,206,047	+		HSERO_RS09730	0.52	-2.6
2,206,206	-		HSERO_RS09730	0.66	-2.1
2,206,312	-		HSERO_RS09730	0.76	-1.6
2,206,343	-		HSERO_RS09730	0.79	-2.1
2,206,675	+				-2.1
2,207,020	+		HSERO_RS09735	0.32	-2.2
2,207,082	-		HSERO_RS09735	0.37	-1.1
2,207,325	-		HSERO_RS09735	0.54	-1.5
2,207,424	-		HSERO_RS09735	0.61	+2.2
2,207,456	-		HSERO_RS09735	0.64	-2.0