Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09425

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
2,142,348	-				-0.2
2,142,384	+				+0.1
2,142,445	-				-0.4
2,142,541	-				+1.0
2,142,595	+				+2.2
2,142,675	-		HSERO_RS09420	0.16	+0.4
2,142,680	-		HSERO_RS09420	0.17	+1.9
2,142,805	+		HSERO_RS09420	0.36	+1.0
2,142,923	-		HSERO_RS09420	0.54	+0.1
2,142,976	-				+1.0
2,143,303	-		HSERO_RS09425	0.18	+0.6
2,143,329	-		HSERO_RS09425	0.25	-0.6
2,143,354	+		HSERO_RS09425	0.31	+0.9
2,143,409	+		HSERO_RS09425	0.46	+0.2
2,143,412	-		HSERO_RS09425	0.47	+0.3
2,143,546	-				-0.8
2,143,549	-		HSERO_RS09425	0.83	+0.5
2,143,612	-				+0.3
2,143,612	-				-0.8
2,143,644	+				-0.2
2,143,644	+				+0.0
2,143,652	-				+1.0
2,143,652	-				-0.3
2,143,868	+		HSERO_RS09430	0.20	+0.6
2,144,028	+		HSERO_RS09430	0.36	+0.2
2,144,177	+		HSERO_RS09430	0.50	+0.4
2,144,257	+		HSERO_RS09430	0.58	+0.1
2,144,279	-		HSERO_RS09430	0.60	-0.5
2,144,488	+				+0.6
2,144,555	+		HSERO_RS09430	0.87	+1.2
2,144,555	+		HSERO_RS09430	0.87	+0.0