Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08650

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,962,711	-		HSERO_RS08645	0.34	-0.5
1,962,711	-		HSERO_RS08645	0.34	+0.0
1,962,759	-		HSERO_RS08645	0.43	+1.1
1,962,787	+		HSERO_RS08645	0.47	+0.3
1,962,865	+		HSERO_RS08645	0.61	+1.3
1,963,030	+		HSERO_RS08645	0.89	+0.9
1,963,091	+				-2.1
1,963,118	+				+0.5
1,963,260	+				+2.8
1,963,376	-				-2.5
1,963,428	-				-3.2
1,963,428	-				-1.6
1,963,428	-				-2.6
1,963,441	-				-2.9
1,963,509	+				-1.3
1,963,833	+		HSERO_RS08650	0.11	-4.3
1,963,987	+		HSERO_RS08650	0.20	-4.9
1,963,995	-		HSERO_RS08650	0.21	-2.3
1,964,043	-		HSERO_RS08650	0.24	-4.5
1,964,110	+		HSERO_RS08650	0.28	-6.1
1,964,224	-		HSERO_RS08650	0.34	-4.8
1,964,357	-		HSERO_RS08650	0.42	-6.2
1,964,513	-		HSERO_RS08650	0.51	-5.9
1,964,616	-		HSERO_RS08650	0.57	-1.5
1,964,851	+		HSERO_RS08650	0.71	-6.8
1,964,998	-		HSERO_RS08650	0.79	-3.0
1,965,003	-		HSERO_RS08650	0.79	-4.8
1,965,289	+				-6.1
1,965,297	-				-3.4
1,965,457	+		HSERO_RS08655	0.20	-0.5
1,965,465	-		HSERO_RS08655	0.22	-3.7
1,965,489	+		HSERO_RS08655	0.27	-2.1
1,965,877	+				-0.9
1,965,903	+				-2.4
1,965,911	-				-4.0
1,966,060	-		HSERO_RS08660	0.13	-1.8
1,966,060	-		HSERO_RS08660	0.13	-2.5