Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08050

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS08045 and HSERO_RS08050 are separated by 366 nucleotidesHSERO_RS08050 and HSERO_RS08055 are separated by 14 nucleotidesHSERO_RS08055 and HSERO_RS08060 are separated by 71 nucleotides HSERO_RS08045: HSERO_RS08045 - preprotein translocase subunit TatB, at 1,839,825 to 1,842,062 _RS08045 HSERO_RS08050: HSERO_RS08050 - cytochrome C, at 1,842,429 to 1,842,749 _RS08050 HSERO_RS08055: HSERO_RS08055 - cytochrome C, at 1,842,764 to 1,843,117 _RS08055 HSERO_RS08060: HSERO_RS08060 - hypothetical protein, at 1,843,189 to 1,843,620 _RS08060 Position (kb) 1842 1843Strain fitness (log2 ratio) -2 -1 0 1at 1841.517 kb on - strand, within HSERO_RS08045at 1841.661 kb on - strand, within HSERO_RS08045at 1841.982 kb on - strandat 1842.224 kb on + strandat 1842.274 kb on + strandat 1842.702 kb on + strand, within HSERO_RS08050at 1842.898 kb on - strand, within HSERO_RS08055at 1842.960 kb on + strand, within HSERO_RS08055at 1843.036 kb on - strand, within HSERO_RS08055at 1843.698 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,841,517 - HSERO_RS08045 0.76 +1.1
1,841,661 - HSERO_RS08045 0.82 +0.9
1,841,982 - +0.3
1,842,224 + -0.1
1,842,274 + -0.6
1,842,702 + HSERO_RS08050 0.85 +0.9
1,842,898 - HSERO_RS08055 0.38 -2.3
1,842,960 + HSERO_RS08055 0.55 -0.1
1,843,036 - HSERO_RS08055 0.77 +0.2
1,843,698 - +0.1

Or see this region's nucleotide sequence