Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07115

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS07110 and HSERO_RS07115 are separated by 200 nucleotidesHSERO_RS07115 and HSERO_RS07120 overlap by 4 nucleotidesHSERO_RS07120 and HSERO_RS07125 are separated by 203 nucleotides HSERO_RS07110: HSERO_RS07110 - 16S rRNA methyltransferase, at 1,620,138 to 1,620,863 _RS07110 HSERO_RS07115: HSERO_RS07115 - transketolase, at 1,621,064 to 1,623,058 _RS07115 HSERO_RS07120: HSERO_RS07120 - acetyltransferase, at 1,623,055 to 1,623,600 _RS07120 HSERO_RS07125: HSERO_RS07125 - glyceraldehyde-3-phosphate dehydrogenase, at 1,623,804 to 1,624,817 _RS07125 Position (kb) 1621 1622 1623 1624Strain fitness (log2 ratio) -1 0 1at 1620.224 kb on + strand, within HSERO_RS07110at 1620.228 kb on - strand, within HSERO_RS07110at 1620.268 kb on - strand, within HSERO_RS07110at 1620.392 kb on - strand, within HSERO_RS07110at 1620.569 kb on + strand, within HSERO_RS07110at 1620.627 kb on - strand, within HSERO_RS07110at 1620.747 kb on - strand, within HSERO_RS07110at 1620.747 kb on - strand, within HSERO_RS07110at 1620.757 kb on - strand, within HSERO_RS07110at 1620.938 kb on + strandat 1623.037 kb on + strandat 1623.052 kb on + strandat 1623.060 kb on - strandat 1623.915 kb on - strand, within HSERO_RS07125

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,620,224 + HSERO_RS07110 0.12 +0.9
1,620,228 - HSERO_RS07110 0.12 +0.4
1,620,268 - HSERO_RS07110 0.18 -1.5
1,620,392 - HSERO_RS07110 0.35 +1.0
1,620,569 + HSERO_RS07110 0.59 -0.9
1,620,627 - HSERO_RS07110 0.67 +0.7
1,620,747 - HSERO_RS07110 0.84 +1.4
1,620,747 - HSERO_RS07110 0.84 +0.3
1,620,757 - HSERO_RS07110 0.85 +0.7
1,620,938 + -0.1
1,623,037 + +0.0
1,623,052 + +1.0
1,623,060 - -1.0
1,623,915 - HSERO_RS07125 0.11 -0.3

Or see this region's nucleotide sequence