Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07105

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,617,050	-		HSERO_RS07100	0.28	-1.8
1,617,171	-				+0.3
1,617,310	+		HSERO_RS07100	0.51	-1.5
1,617,413	-		HSERO_RS07100	0.61	-0.7
1,617,459	-		HSERO_RS07100	0.65	-0.5
1,617,569	+		HSERO_RS07100	0.75	-0.1
1,617,734	+		HSERO_RS07100	0.90	-0.1
1,617,851	+				-1.5
1,617,879	-				-1.7
1,617,951	+				-0.6
1,617,965	-				-0.3
1,618,014	-				-0.6
1,618,033	-				+0.0
1,618,033	-				+0.7
1,618,151	-				+0.3
1,618,291	-		HSERO_RS07105	0.16	-0.1
1,618,291	-		HSERO_RS07105	0.16	+0.1
1,618,291	-		HSERO_RS07105	0.16	-0.1
1,618,303	-		HSERO_RS07105	0.16	-1.6
1,618,327	-		HSERO_RS07105	0.18	-2.7
1,618,333	-		HSERO_RS07105	0.18	-1.7
1,618,419	+		HSERO_RS07105	0.23	-0.7
1,618,437	-		HSERO_RS07105	0.24	+0.5
1,618,451	+		HSERO_RS07105	0.25	+0.2
1,618,507	-		HSERO_RS07105	0.28	-0.4
1,618,542	-				+1.5
1,618,580	+		HSERO_RS07105	0.32	-0.3
1,618,661	+		HSERO_RS07105	0.36	+0.2
1,618,669	-		HSERO_RS07105	0.37	-0.6
1,618,689	-		HSERO_RS07105	0.38	-1.3
1,618,689	-		HSERO_RS07105	0.38	-0.1
1,618,768	-		HSERO_RS07105	0.42	+0.0
1,618,901	-		HSERO_RS07105	0.50	+0.5
1,618,961	+		HSERO_RS07105	0.53	-2.1
1,618,970	-		HSERO_RS07105	0.54	-0.2
1,619,307	+		HSERO_RS07105	0.73	+0.7
1,619,435	-		HSERO_RS07105	0.80	-0.3
1,619,450	-		HSERO_RS07105	0.81	+0.0
1,619,614	+		HSERO_RS07105	0.90	-0.2
1,619,614	+		HSERO_RS07105	0.90	-0.3
1,619,622	-				-0.2
1,619,688	+				+0.7
1,620,042	+				-0.2
1,620,042	+				-0.8
1,620,042	+				-1.7
1,620,050	-				+0.2
1,620,224	+		HSERO_RS07110	0.12	+0.9
1,620,228	-		HSERO_RS07110	0.12	+0.4
1,620,268	-		HSERO_RS07110	0.18	-1.5
1,620,392	-		HSERO_RS07110	0.35	+1.0
1,620,569	+		HSERO_RS07110	0.59	-0.9
1,620,627	-		HSERO_RS07110	0.67	+0.7
1,620,747	-		HSERO_RS07110	0.84	+1.4
1,620,747	-		HSERO_RS07110	0.84	+0.3
1,620,757	-		HSERO_RS07110	0.85	+0.7