Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07100

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,615,804	-				+2.3
1,615,865	+		HSERO_RS07095	0.25	+0.3
1,615,865	+		HSERO_RS07095	0.25	-0.1
1,615,870	+		HSERO_RS07095	0.26	+1.0
1,615,870	+		HSERO_RS07095	0.26	-0.0
1,615,878	-		HSERO_RS07095	0.26	+0.6
1,615,934	-				-1.0
1,615,979	+		HSERO_RS07095	0.35	+0.1
1,616,074	-		HSERO_RS07095	0.43	+0.2
1,616,074	-		HSERO_RS07095	0.43	-0.0
1,616,126	+		HSERO_RS07095	0.48	-0.6
1,616,126	+		HSERO_RS07095	0.48	-0.8
1,616,467	-		HSERO_RS07095	0.77	-0.3
1,616,489	+		HSERO_RS07095	0.79	+0.0
1,616,497	-		HSERO_RS07095	0.80	+1.3
1,616,546	-		HSERO_RS07095	0.84	+0.9
1,616,550	-		HSERO_RS07095	0.84	+0.6
1,616,605	-		HSERO_RS07095	0.89	-1.0
1,616,649	+				-0.1
1,616,726	+				-0.3
1,616,747	-				+0.8
1,616,758	-				-0.9
1,617,050	-		HSERO_RS07100	0.28	-1.8
1,617,171	-				+0.3
1,617,310	+		HSERO_RS07100	0.51	-1.5
1,617,413	-		HSERO_RS07100	0.61	-0.7
1,617,459	-		HSERO_RS07100	0.65	-0.5
1,617,569	+		HSERO_RS07100	0.75	-0.1
1,617,734	+		HSERO_RS07100	0.90	-0.1
1,617,851	+				-1.5
1,617,879	-				-1.7
1,617,951	+				-0.6
1,617,965	-				-0.3
1,618,014	-				-0.6
1,618,033	-				+0.0
1,618,033	-				+0.7
1,618,151	-				+0.3
1,618,291	-		HSERO_RS07105	0.16	-0.1
1,618,291	-		HSERO_RS07105	0.16	+0.1
1,618,291	-		HSERO_RS07105	0.16	-0.1
1,618,303	-		HSERO_RS07105	0.16	-1.6
1,618,327	-		HSERO_RS07105	0.18	-2.7
1,618,333	-		HSERO_RS07105	0.18	-1.7
1,618,419	+		HSERO_RS07105	0.23	-0.7
1,618,437	-		HSERO_RS07105	0.24	+0.5
1,618,451	+		HSERO_RS07105	0.25	+0.2
1,618,507	-		HSERO_RS07105	0.28	-0.4
1,618,542	-				+1.5
1,618,580	+		HSERO_RS07105	0.32	-0.3
1,618,661	+		HSERO_RS07105	0.36	+0.2
1,618,669	-		HSERO_RS07105	0.37	-0.6
1,618,689	-		HSERO_RS07105	0.38	-1.3
1,618,689	-		HSERO_RS07105	0.38	-0.1
1,618,768	-		HSERO_RS07105	0.42	+0.0