Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06965

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,585,048	-				-0.1
1,585,338	-		HSERO_RS06960	0.39	+0.8
1,585,629	-		HSERO_RS06960	0.81	-0.6
1,585,629	-		HSERO_RS06960	0.81	+0.4
1,585,656	+		HSERO_RS06960	0.85	-0.9
1,585,715	-				+0.2
1,585,857	+				-2.9
1,585,964	-				+0.9
1,586,134	-		HSERO_RS06965	0.22	-1.2
1,586,134	-		HSERO_RS06965	0.22	-0.3
1,586,134	-		HSERO_RS06965	0.22	-0.4
1,586,174	-				-0.1
1,586,355	-		HSERO_RS06965	0.39	-0.2
1,586,373	+		HSERO_RS06965	0.41	-0.0
1,586,373	+		HSERO_RS06965	0.41	-0.2
1,586,373	+		HSERO_RS06965	0.41	+0.0
1,586,443	+		HSERO_RS06965	0.46	-0.2
1,586,451	-		HSERO_RS06965	0.47	+1.7
1,586,550	+				-0.0
1,586,677	+				+1.0
1,586,832	+		HSERO_RS06965	0.77	-0.4
1,586,914	-		HSERO_RS06965	0.83	+0.3
1,586,944	-		HSERO_RS06965	0.86	-0.2
1,587,004	-				-0.2
1,587,055	+				-0.2
1,587,055	+				+0.6
1,587,548	+		HSERO_RS06970	0.48	+0.3
1,587,648	+		HSERO_RS06970	0.61	+0.3
1,587,688	-		HSERO_RS06970	0.66	-0.8
1,587,962	-				+0.5