Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06615

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06605 and HSERO_RS06610 overlap by 4 nucleotidesHSERO_RS06610 and HSERO_RS06615 are separated by 21 nucleotidesHSERO_RS06615 and HSERO_RS06620 overlap by 4 nucleotidesHSERO_RS06620 and HSERO_RS06625 are separated by 401 nucleotides HSERO_RS06605: HSERO_RS06605 - thioredoxin reductase, at 1,501,817 to 1,502,431 _RS06605 HSERO_RS06610: HSERO_RS06610 - oxidoreductase, molybdopterin-binding protein, at 1,502,428 to 1,503,204 _RS06610 HSERO_RS06615: HSERO_RS06615 - cytochrome protein, at 1,503,226 to 1,506,150 _RS06615 HSERO_RS06620: HSERO_RS06620 - (2Fe-2S)-binding protein, at 1,506,147 to 1,506,629 _RS06620 HSERO_RS06625: HSERO_RS06625 - Asp/Glu racemase, at 1,507,031 to 1,507,786 _RS06625 Position (kb) 1503 1504 1505 1506 1507Strain fitness (log2 ratio) -2 -1 0 1at 1502.275 kb on + strand, within HSERO_RS06605at 1502.290 kb on - strand, within HSERO_RS06605at 1502.456 kb on - strandat 1502.502 kb on - strandat 1502.508 kb on - strand, within HSERO_RS06610at 1502.617 kb on - strand, within HSERO_RS06610at 1502.930 kb on + strand, within HSERO_RS06610at 1503.061 kb on + strand, within HSERO_RS06610at 1503.453 kb on - strandat 1503.463 kb on - strandat 1503.620 kb on - strand, within HSERO_RS06615at 1503.835 kb on + strand, within HSERO_RS06615at 1503.835 kb on + strand, within HSERO_RS06615at 1504.006 kb on - strandat 1504.008 kb on + strand, within HSERO_RS06615at 1504.071 kb on - strand, within HSERO_RS06615at 1504.081 kb on - strand, within HSERO_RS06615at 1504.285 kb on + strand, within HSERO_RS06615at 1504.348 kb on - strand, within HSERO_RS06615at 1504.625 kb on + strand, within HSERO_RS06615at 1504.731 kb on - strand, within HSERO_RS06615at 1504.881 kb on + strand, within HSERO_RS06615at 1505.075 kb on + strand, within HSERO_RS06615at 1505.134 kb on + strand, within HSERO_RS06615at 1505.289 kb on - strand, within HSERO_RS06615at 1505.398 kb on + strand, within HSERO_RS06615at 1505.514 kb on + strand, within HSERO_RS06615at 1505.544 kb on + strand, within HSERO_RS06615at 1505.559 kb on + strand, within HSERO_RS06615at 1505.567 kb on - strand, within HSERO_RS06615at 1505.803 kb on + strand, within HSERO_RS06615at 1505.826 kb on + strand, within HSERO_RS06615at 1505.826 kb on + strand, within HSERO_RS06615at 1505.834 kb on - strand, within HSERO_RS06615at 1505.974 kb on + strandat 1506.027 kb on + strandat 1506.324 kb on + strand, within HSERO_RS06620at 1506.495 kb on - strand, within HSERO_RS06620at 1506.510 kb on - strand, within HSERO_RS06620at 1506.572 kb on + strand, within HSERO_RS06620at 1506.580 kb on - strand, within HSERO_RS06620at 1506.724 kb on + strandat 1506.724 kb on + strandat 1506.724 kb on + strandat 1506.724 kb on + strandat 1506.732 kb on - strandat 1506.744 kb on - strandat 1506.747 kb on + strandat 1507.008 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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1,502,275 + HSERO_RS06605 0.74 -0.3
1,502,290 - HSERO_RS06605 0.77 +0.2
1,502,456 - -0.0
1,502,502 - +0.7
1,502,508 - HSERO_RS06610 0.10 -0.0
1,502,617 - HSERO_RS06610 0.24 +0.0
1,502,930 + HSERO_RS06610 0.65 -2.3
1,503,061 + HSERO_RS06610 0.81 -0.1
1,503,453 - -0.8
1,503,463 - +0.0
1,503,620 - HSERO_RS06615 0.13 -0.2
1,503,835 + HSERO_RS06615 0.21 +0.1
1,503,835 + HSERO_RS06615 0.21 +0.9
1,504,006 - +0.2
1,504,008 + HSERO_RS06615 0.27 -0.2
1,504,071 - HSERO_RS06615 0.29 +0.1
1,504,081 - HSERO_RS06615 0.29 -0.2
1,504,285 + HSERO_RS06615 0.36 +0.3
1,504,348 - HSERO_RS06615 0.38 -0.0
1,504,625 + HSERO_RS06615 0.48 +0.4
1,504,731 - HSERO_RS06615 0.51 +0.6
1,504,881 + HSERO_RS06615 0.57 -0.4
1,505,075 + HSERO_RS06615 0.63 -0.2
1,505,134 + HSERO_RS06615 0.65 +0.0
1,505,289 - HSERO_RS06615 0.71 -0.2
1,505,398 + HSERO_RS06615 0.74 +1.5
1,505,514 + HSERO_RS06615 0.78 +0.4
1,505,544 + HSERO_RS06615 0.79 +0.0
1,505,559 + HSERO_RS06615 0.80 +1.1
1,505,567 - HSERO_RS06615 0.80 -0.1
1,505,803 + HSERO_RS06615 0.88 -0.7
1,505,826 + HSERO_RS06615 0.89 -0.2
1,505,826 + HSERO_RS06615 0.89 -0.0
1,505,834 - HSERO_RS06615 0.89 +0.2
1,505,974 + -0.2
1,506,027 + -1.0
1,506,324 + HSERO_RS06620 0.37 -0.6
1,506,495 - HSERO_RS06620 0.72 -1.0
1,506,510 - HSERO_RS06620 0.75 -1.2
1,506,572 + HSERO_RS06620 0.88 -0.6
1,506,580 - HSERO_RS06620 0.90 +0.7
1,506,724 + +0.3
1,506,724 + +0.5
1,506,724 + -0.5
1,506,724 + +0.3
1,506,732 - +0.2
1,506,744 - +0.4
1,506,747 + -0.5
1,507,008 + -1.2

Or see this region's nucleotide sequence