Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06585

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,496,633	-		HSERO_RS06580	0.20	+0.3
1,496,940	-		HSERO_RS06580	0.46	-0.1
1,496,951	-		HSERO_RS06580	0.47	-0.9
1,496,951	-		HSERO_RS06580	0.47	-0.0
1,497,175	-		HSERO_RS06580	0.66	-0.2
1,497,186	-		HSERO_RS06580	0.67	+0.2
1,497,309	+		HSERO_RS06580	0.77	-0.5
1,497,310	+		HSERO_RS06580	0.78	-0.2
1,497,335	+		HSERO_RS06580	0.80	-0.5
1,497,389	-		HSERO_RS06580	0.84	-0.0
1,497,655	+				-0.2
1,497,663	-				-1.4
1,497,769	-		HSERO_RS06585	0.15	+0.7
1,498,007	+		HSERO_RS06585	0.33	+0.5
1,498,029	-		HSERO_RS06585	0.35	+0.0
1,498,043	-		HSERO_RS06585	0.36	-0.1
1,498,082	+		HSERO_RS06585	0.39	+0.9
1,498,346	-		HSERO_RS06585	0.60	+0.3
1,498,380	+		HSERO_RS06585	0.63	+0.4
1,498,380	+		HSERO_RS06585	0.63	+0.2
1,498,407	+		HSERO_RS06585	0.65	-0.1
1,498,574	-		HSERO_RS06585	0.78	-0.5
1,498,584	-		HSERO_RS06585	0.78	+0.3
1,498,876	+				+0.3
1,499,029	+		HSERO_RS06590	0.11	+0.4
1,499,037	-		HSERO_RS06590	0.12	-0.3
1,499,089	+		HSERO_RS06590	0.15	+0.2
1,499,358	-		HSERO_RS06590	0.33	-0.2
1,499,607	-		HSERO_RS06590	0.49	-0.0
1,499,663	-		HSERO_RS06590	0.52	-0.3
1,499,666	+		HSERO_RS06590	0.53	-0.3
1,499,675	-		HSERO_RS06590	0.53	+0.2
1,499,746	-		HSERO_RS06590	0.58	+0.3