Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06310

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,425,093	+		HSERO_RS06305	0.78	-0.4
1,425,139	+		HSERO_RS06305	0.80	+0.1
1,425,325	-				+0.1
1,425,376	-				+0.7
1,425,468	+				-0.3
1,425,559	+				-0.1
1,425,569	+				-0.1
1,425,599	+				+0.2
1,425,607	-				-0.0
1,425,609	+				-1.3
1,425,641	-				+1.4
1,425,719	+				-0.6
1,425,766	-				+1.0
1,425,783	-				+1.2
1,425,911	+				-1.0
1,425,919	-				-1.1
1,425,965	+				+0.5
1,426,092	+		HSERO_RS06310	0.12	-1.2
1,426,102	+		HSERO_RS06310	0.13	+0.7
1,426,102	+		HSERO_RS06310	0.13	-0.4
1,426,102	+		HSERO_RS06310	0.13	-0.7
1,426,110	-		HSERO_RS06310	0.14	-0.2
1,426,168	+		HSERO_RS06310	0.20	-0.0
1,426,176	-		HSERO_RS06310	0.20	-0.0
1,426,182	-		HSERO_RS06310	0.21	-0.4
1,426,182	-		HSERO_RS06310	0.21	+1.5
1,426,296	+		HSERO_RS06310	0.32	+0.0
1,426,304	-		HSERO_RS06310	0.33	+0.3
1,426,304	-		HSERO_RS06310	0.33	-0.1
1,426,411	+		HSERO_RS06310	0.43	+0.5
1,426,440	+		HSERO_RS06310	0.46	+0.4
1,426,473	+		HSERO_RS06310	0.49	-1.4
1,426,473	+		HSERO_RS06310	0.49	+1.0
1,426,481	-		HSERO_RS06310	0.49	-0.2
1,426,481	-		HSERO_RS06310	0.49	+2.0
1,426,483	+		HSERO_RS06310	0.50	+0.1
1,426,483	+		HSERO_RS06310	0.50	+0.1
1,426,529	+		HSERO_RS06310	0.54	-0.3
1,426,529	+		HSERO_RS06310	0.54	-0.1
1,426,586	-		HSERO_RS06310	0.59	-0.3
1,426,594	+		HSERO_RS06310	0.60	-0.2
1,426,743	-		HSERO_RS06310	0.74	-0.2
1,426,809	+		HSERO_RS06310	0.81	+1.1
1,426,852	+		HSERO_RS06310	0.85	+0.9
1,426,852	+		HSERO_RS06310	0.85	+1.1
1,426,852	+		HSERO_RS06310	0.85	-0.3
1,426,852	+		HSERO_RS06310	0.85	-0.4
1,426,860	-		HSERO_RS06310	0.86	+1.0
1,426,985	-				-0.3
1,427,011	+				+0.7
1,427,139	+				-1.2
1,427,186	+				-0.0
1,427,408	-		HSERO_RS06315	0.22	+0.3
1,427,551	-		HSERO_RS06315	0.36	-1.9
1,427,571	+		HSERO_RS06315	0.38	-0.4
1,427,575	+		HSERO_RS06315	0.39	+0.0
1,427,579	-		HSERO_RS06315	0.39	+0.9
1,427,589	-		HSERO_RS06315	0.40	+0.1
1,427,631	-		HSERO_RS06315	0.44	+0.1
1,427,696	+		HSERO_RS06315	0.51	-1.2
1,427,719	+		HSERO_RS06315	0.53	-0.1
1,427,725	-		HSERO_RS06315	0.54	+0.1
1,427,727	-		HSERO_RS06315	0.54	-0.3
1,427,887	+		HSERO_RS06315	0.70	-0.1
1,427,897	+		HSERO_RS06315	0.71	+0.5
1,427,940	-		HSERO_RS06315	0.75	-0.0