Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05910

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,342,113	+		HSERO_RS05900	0.23	+1.4
1,342,143	+		HSERO_RS05900	0.31	-0.8
1,342,176	+		HSERO_RS05900	0.39	+1.1
1,342,184	-		HSERO_RS05900	0.41	-1.1
1,342,464	+				-0.9
1,342,464	+				-0.0
1,342,477	-				-1.5
1,342,511	-				+0.8
1,342,516	-				-0.3
1,342,563	+				-0.3
1,342,576	-				+0.0
1,343,166	+		HSERO_RS05910	0.23	-1.5
1,343,286	+		HSERO_RS05910	0.41	-2.0
1,343,831	+				+0.3
1,343,912	+		HSERO_RS05915	0.15	+0.1
1,343,975	-		HSERO_RS05915	0.20	+0.5
1,343,984	-				+2.4
1,344,134	+		HSERO_RS05915	0.32	-0.8
1,344,144	+		HSERO_RS05915	0.33	-0.1
1,344,326	-		HSERO_RS05915	0.48	+0.9
1,344,326	-		HSERO_RS05915	0.48	+0.5