Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02645 and HSERO_RS02650 are separated by 162 nucleotides HSERO_RS02650 and HSERO_RS02655 are separated by 90 nucleotides
HSERO_RS02645: HSERO_RS02645 - MFS transporter, at 579,602 to 581,056
_RS02645
HSERO_RS02650: HSERO_RS02650 - dihydroxy-acid dehydratase, at 581,219 to 583,081
_RS02650
HSERO_RS02655: HSERO_RS02655 - transporter, at 583,172 to 585,052
_RS02655
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 580.231 kb on + strand, within HSERO_RS02645 at 580.405 kb on - strand, within HSERO_RS02645 at 580.493 kb on + strand, within HSERO_RS02645 at 580.522 kb on + strand, within HSERO_RS02645 at 580.708 kb on + strand, within HSERO_RS02645 at 580.829 kb on + strand, within HSERO_RS02645 at 580.946 kb on + strand at 580.992 kb on + strand at 581.010 kb on - strand at 581.036 kb on - strand at 581.171 kb on - strand at 581.179 kb on - strand at 581.199 kb on + strand at 581.207 kb on - strand at 581.254 kb on - strand at 581.328 kb on - strand at 581.343 kb on - strand at 581.536 kb on - strand, within HSERO_RS02650 at 581.536 kb on - strand, within HSERO_RS02650 at 581.639 kb on - strand, within HSERO_RS02650 at 582.106 kb on - strand, within HSERO_RS02650 at 582.163 kb on + strand, within HSERO_RS02650 at 582.170 kb on + strand at 582.203 kb on + strand, within HSERO_RS02650 at 582.222 kb on + strand, within HSERO_RS02650 at 582.228 kb on + strand, within HSERO_RS02650 at 582.257 kb on + strand, within HSERO_RS02650 at 582.299 kb on - strand, within HSERO_RS02650 at 582.299 kb on - strand, within HSERO_RS02650 at 582.637 kb on + strand, within HSERO_RS02650 at 582.637 kb on + strand, within HSERO_RS02650 at 582.768 kb on - strand, within HSERO_RS02650 at 582.824 kb on - strand, within HSERO_RS02650 at 583.030 kb on - strand at 583.156 kb on - strand at 583.341 kb on + strand at 583.359 kb on - strand at 583.464 kb on - strand, within HSERO_RS02655 at 583.816 kb on + strand, within HSERO_RS02655 at 583.911 kb on - strand, within HSERO_RS02655 at 583.911 kb on - strand, within HSERO_RS02655 at 584.049 kb on + strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655 at 584.057 kb on - strand, within HSERO_RS02655
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 580,231 + HSERO_RS02645 0.43 -0.2 580,405 - HSERO_RS02645 0.55 +1.1 580,493 + HSERO_RS02645 0.61 -0.2 580,522 + HSERO_RS02645 0.63 -0.1 580,708 + HSERO_RS02645 0.76 -1.3 580,829 + HSERO_RS02645 0.84 -0.1 580,946 + +0.6 580,992 + -0.8 581,010 - -1.3 581,036 - +0.0 581,171 - -3.7 581,179 - -1.5 581,199 + -0.8 581,207 - -4.5 581,254 - -4.1 581,328 - -5.4 581,343 - -3.5 581,536 - HSERO_RS02650 0.17 -2.1 581,536 - HSERO_RS02650 0.17 -2.3 581,639 - HSERO_RS02650 0.23 -5.3 582,106 - HSERO_RS02650 0.48 -3.2 582,163 + HSERO_RS02650 0.51 -3.5 582,170 + -1.5 582,203 + HSERO_RS02650 0.53 -3.0 582,222 + HSERO_RS02650 0.54 -4.7 582,228 + HSERO_RS02650 0.54 -4.9 582,257 + HSERO_RS02650 0.56 -1.7 582,299 - HSERO_RS02650 0.58 -3.7 582,299 - HSERO_RS02650 0.58 -2.1 582,637 + HSERO_RS02650 0.76 -4.8 582,637 + HSERO_RS02650 0.76 -1.7 582,768 - HSERO_RS02650 0.83 -2.5 582,824 - HSERO_RS02650 0.86 -3.9 583,030 - -3.5 583,156 - -1.5 583,341 + -1.3 583,359 - +0.0 583,464 - HSERO_RS02655 0.16 +0.8 583,816 + HSERO_RS02655 0.34 -0.8 583,911 - HSERO_RS02655 0.39 +0.2 583,911 - HSERO_RS02655 0.39 +0.8 584,049 + HSERO_RS02655 0.47 -1.5 584,057 - HSERO_RS02655 0.47 -0.6 584,057 - HSERO_RS02655 0.47 -0.2 584,057 - HSERO_RS02655 0.47 +0.4
Or see this region's nucleotide sequence