Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02155

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02150 and HSERO_RS02155 are separated by 233 nucleotidesHSERO_RS02155 and HSERO_RS02160 are separated by 108 nucleotides HSERO_RS02150: HSERO_RS02150 - MFS transporter, at 468,153 to 469,328 _RS02150 HSERO_RS02155: HSERO_RS02155 - chorismate mutase, at 469,562 to 470,131 _RS02155 HSERO_RS02160: HSERO_RS02160 - DNA-dependent helicase, at 470,240 to 472,519 _RS02160 Position (kb) 469 470 471Strain fitness (log2 ratio) -3 -2 -1 0 1at 468.622 kb on - strand, within HSERO_RS02150at 468.627 kb on - strand, within HSERO_RS02150at 468.685 kb on - strand, within HSERO_RS02150at 468.686 kb on - strand, within HSERO_RS02150at 468.715 kb on - strand, within HSERO_RS02150at 468.842 kb on - strand, within HSERO_RS02150at 468.842 kb on - strand, within HSERO_RS02150at 468.859 kb on + strand, within HSERO_RS02150at 468.877 kb on - strandat 469.051 kb on - strand, within HSERO_RS02150at 469.051 kb on - strand, within HSERO_RS02150at 469.162 kb on + strand, within HSERO_RS02150at 469.214 kb on + strandat 469.627 kb on + strand, within HSERO_RS02155at 469.750 kb on - strand, within HSERO_RS02155at 469.843 kb on + strand, within HSERO_RS02155at 469.999 kb on - strand, within HSERO_RS02155at 470.170 kb on + strandat 470.193 kb on - strandat 470.193 kb on - strandat 470.254 kb on + strandat 470.460 kb on - strandat 470.510 kb on - strand, within HSERO_RS02160at 470.588 kb on - strand, within HSERO_RS02160

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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468,622 - HSERO_RS02150 0.40 +1.5
468,627 - HSERO_RS02150 0.40 +0.2
468,685 - HSERO_RS02150 0.45 +0.6
468,686 - HSERO_RS02150 0.45 +0.3
468,715 - HSERO_RS02150 0.48 +0.6
468,842 - HSERO_RS02150 0.59 +0.3
468,842 - HSERO_RS02150 0.59 +0.1
468,859 + HSERO_RS02150 0.60 -0.4
468,877 - +1.2
469,051 - HSERO_RS02150 0.76 +0.6
469,051 - HSERO_RS02150 0.76 +0.5
469,162 + HSERO_RS02150 0.86 -0.2
469,214 + +0.8
469,627 + HSERO_RS02155 0.11 -0.4
469,750 - HSERO_RS02155 0.33 +0.3
469,843 + HSERO_RS02155 0.49 +0.6
469,999 - HSERO_RS02155 0.77 +0.0
470,170 + +0.1
470,193 - -0.1
470,193 - -0.4
470,254 + -0.2
470,460 - -3.0
470,510 - HSERO_RS02160 0.12 -3.6
470,588 - HSERO_RS02160 0.15 -2.8

Or see this region's nucleotide sequence