Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02135 and HSERO_RS02140 are separated by 1 nucleotides HSERO_RS02140 and HSERO_RS02145 are separated by 188 nucleotides HSERO_RS02145 and HSERO_RS02150 are separated by 236 nucleotides
HSERO_RS02135: HSERO_RS02135 - phosphomethylpyrimidine kinase, at 465,733 to 466,599
_RS02135
HSERO_RS02140: HSERO_RS02140 - thiamine-phosphate synthase, at 466,601 to 467,233
_RS02140
HSERO_RS02145: HSERO_RS02145 - ferritin, at 467,422 to 467,916
_RS02145
HSERO_RS02150: HSERO_RS02150 - MFS transporter, at 468,153 to 469,328
_RS02150
Position (kb) 467
468 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 466.474 kb on - strand, within HSERO_RS02135 at 466.485 kb on - strand at 466.487 kb on + strand, within HSERO_RS02135 at 466.567 kb on + strand at 466.682 kb on + strand, within HSERO_RS02140 at 466.803 kb on - strand at 467.172 kb on + strand at 467.210 kb on - strand at 467.264 kb on + strand at 467.264 kb on + strand at 467.264 kb on + strand at 467.348 kb on - strand at 467.808 kb on + strand, within HSERO_RS02145 at 467.923 kb on + strand at 467.931 kb on - strand at 467.953 kb on + strand at 467.955 kb on + strand at 467.961 kb on - strand at 467.963 kb on - strand at 467.963 kb on - strand at 467.963 kb on - strand at 468.104 kb on + strand at 468.151 kb on + strand at 468.170 kb on + strand at 468.236 kb on + strand at 468.250 kb on + strand at 468.404 kb on + strand, within HSERO_RS02150 at 468.419 kb on + strand, within HSERO_RS02150 at 468.424 kb on + strand, within HSERO_RS02150 at 468.622 kb on - strand, within HSERO_RS02150 at 468.627 kb on - strand, within HSERO_RS02150 at 468.685 kb on - strand, within HSERO_RS02150 at 468.686 kb on - strand, within HSERO_RS02150 at 468.715 kb on - strand, within HSERO_RS02150 at 468.842 kb on - strand, within HSERO_RS02150 at 468.842 kb on - strand, within HSERO_RS02150 at 468.859 kb on + strand, within HSERO_RS02150 at 468.877 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 466,474 - HSERO_RS02135 0.85 -1.6 466,485 - +2.5 466,487 + HSERO_RS02135 0.87 -2.2 466,567 + +0.4 466,682 + HSERO_RS02140 0.13 -4.0 466,803 - -0.1 467,172 + +0.0 467,210 - -0.3 467,264 + +0.1 467,264 + -0.7 467,264 + -0.5 467,348 - +0.7 467,808 + HSERO_RS02145 0.78 -1.2 467,923 + -1.3 467,931 - -1.2 467,953 + -1.2 467,955 + +0.5 467,961 - +0.3 467,963 - -0.0 467,963 - -0.7 467,963 - -0.2 468,104 + +0.7 468,151 + -0.5 468,170 + -0.5 468,236 + +0.3 468,250 + -0.1 468,404 + HSERO_RS02150 0.21 -0.1 468,419 + HSERO_RS02150 0.23 -0.1 468,424 + HSERO_RS02150 0.23 +0.5 468,622 - HSERO_RS02150 0.40 +1.5 468,627 - HSERO_RS02150 0.40 +0.2 468,685 - HSERO_RS02150 0.45 +0.6 468,686 - HSERO_RS02150 0.45 +0.3 468,715 - HSERO_RS02150 0.48 +0.6 468,842 - HSERO_RS02150 0.59 +0.3 468,842 - HSERO_RS02150 0.59 +0.1 468,859 + HSERO_RS02150 0.60 -0.4 468,877 - +1.2
Or see this region's nucleotide sequence