Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26480

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS26475 and BWI76_RS26480 overlap by 4 nucleotidesBWI76_RS26480 and BWI76_RS26485 are separated by 1 nucleotides BWI76_RS26475: BWI76_RS26475 - bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 5,478,628 to 5,480,613 _RS26475 BWI76_RS26480: BWI76_RS26480 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 5,480,610 to 5,481,593 _RS26480 BWI76_RS26485: BWI76_RS26485 - UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase, at 5,481,595 to 5,482,734 _RS26485 Position (kb) 5480 5481 5482Strain fitness (log2 ratio) -1 0 1 2 3at 5479.699 kb on + strand, within BWI76_RS26475at 5479.707 kb on - strand, within BWI76_RS26475at 5480.260 kb on + strand, within BWI76_RS26475at 5480.307 kb on + strandat 5480.455 kb on + strandat 5480.515 kb on - strandat 5480.571 kb on - strandat 5480.726 kb on + strand, within BWI76_RS26480at 5481.049 kb on + strand, within BWI76_RS26480at 5481.054 kb on - strand, within BWI76_RS26480at 5481.203 kb on - strand, within BWI76_RS26480at 5481.598 kb on - strandat 5481.626 kb on - strandat 5481.650 kb on + strandat 5481.691 kb on + strandat 5481.766 kb on + strand, within BWI76_RS26485at 5481.774 kb on - strand, within BWI76_RS26485at 5481.791 kb on + strand, within BWI76_RS26485at 5481.818 kb on - strand, within BWI76_RS26485at 5481.871 kb on + strand, within BWI76_RS26485at 5482.329 kb on + strand, within BWI76_RS26485at 5482.348 kb on + strand, within BWI76_RS26485at 5482.489 kb on + strand, within BWI76_RS26485at 5482.529 kb on - strand, within BWI76_RS26485at 5482.581 kb on - strand, within BWI76_RS26485

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
remove
5,479,699 + BWI76_RS26475 0.54 +1.7
5,479,707 - BWI76_RS26475 0.54 +1.6
5,480,260 + BWI76_RS26475 0.82 +2.2
5,480,307 + +2.8
5,480,455 + +2.0
5,480,515 - +2.4
5,480,571 - +2.9
5,480,726 + BWI76_RS26480 0.12 +2.6
5,481,049 + BWI76_RS26480 0.45 +2.3
5,481,054 - BWI76_RS26480 0.45 +2.6
5,481,203 - BWI76_RS26480 0.60 +2.7
5,481,598 - +1.1
5,481,626 - +2.5
5,481,650 + +1.8
5,481,691 + +2.0
5,481,766 + BWI76_RS26485 0.15 +2.3
5,481,774 - BWI76_RS26485 0.16 +1.2
5,481,791 + BWI76_RS26485 0.17 -0.6
5,481,818 - BWI76_RS26485 0.20 +1.9
5,481,871 + BWI76_RS26485 0.24 +2.5
5,482,329 + BWI76_RS26485 0.64 +2.3
5,482,348 + BWI76_RS26485 0.66 +2.6
5,482,489 + BWI76_RS26485 0.78 +2.2
5,482,529 - BWI76_RS26485 0.82 +2.3
5,482,581 - BWI76_RS26485 0.86 +2.5

Or see this region's nucleotide sequence