Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26475 and BWI76_RS26480 overlap by 4 nucleotides BWI76_RS26480 and BWI76_RS26485 are separated by 1 nucleotides
BWI76_RS26475: BWI76_RS26475 - bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 5,478,628 to 5,480,613
_RS26475
BWI76_RS26480: BWI76_RS26480 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 5,480,610 to 5,481,593
_RS26480
BWI76_RS26485: BWI76_RS26485 - UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase, at 5,481,595 to 5,482,734
_RS26485
Position (kb)
5480
5481
5482 Strain fitness (log2 ratio)
-1
0
1
2
3 at 5479.699 kb on + strand, within BWI76_RS26475 at 5479.707 kb on - strand, within BWI76_RS26475 at 5480.260 kb on + strand, within BWI76_RS26475 at 5480.307 kb on + strand at 5480.455 kb on + strand at 5480.515 kb on - strand at 5480.571 kb on - strand at 5480.726 kb on + strand, within BWI76_RS26480 at 5481.049 kb on + strand, within BWI76_RS26480 at 5481.054 kb on - strand, within BWI76_RS26480 at 5481.203 kb on - strand, within BWI76_RS26480 at 5481.598 kb on - strand at 5481.626 kb on - strand at 5481.650 kb on + strand at 5481.691 kb on + strand at 5481.766 kb on + strand, within BWI76_RS26485 at 5481.774 kb on - strand, within BWI76_RS26485 at 5481.791 kb on + strand, within BWI76_RS26485 at 5481.818 kb on - strand, within BWI76_RS26485 at 5481.871 kb on + strand, within BWI76_RS26485 at 5482.329 kb on + strand, within BWI76_RS26485 at 5482.348 kb on + strand, within BWI76_RS26485 at 5482.489 kb on + strand, within BWI76_RS26485 at 5482.529 kb on - strand, within BWI76_RS26485 at 5482.581 kb on - strand, within BWI76_RS26485
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 5,479,699 + BWI76_RS26475 0.54 +1.7 5,479,707 - BWI76_RS26475 0.54 +1.6 5,480,260 + BWI76_RS26475 0.82 +2.2 5,480,307 + +2.8 5,480,455 + +2.0 5,480,515 - +2.4 5,480,571 - +2.9 5,480,726 + BWI76_RS26480 0.12 +2.6 5,481,049 + BWI76_RS26480 0.45 +2.3 5,481,054 - BWI76_RS26480 0.45 +2.6 5,481,203 - BWI76_RS26480 0.60 +2.7 5,481,598 - +1.1 5,481,626 - +2.5 5,481,650 + +1.8 5,481,691 + +2.0 5,481,766 + BWI76_RS26485 0.15 +2.3 5,481,774 - BWI76_RS26485 0.16 +1.2 5,481,791 + BWI76_RS26485 0.17 -0.6 5,481,818 - BWI76_RS26485 0.20 +1.9 5,481,871 + BWI76_RS26485 0.24 +2.5 5,482,329 + BWI76_RS26485 0.64 +2.3 5,482,348 + BWI76_RS26485 0.66 +2.6 5,482,489 + BWI76_RS26485 0.78 +2.2 5,482,529 - BWI76_RS26485 0.82 +2.3 5,482,581 - BWI76_RS26485 0.86 +2.5
Or see this region's nucleotide sequence