Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24905 and BWI76_RS24910 are separated by 4 nucleotides BWI76_RS24910 and BWI76_RS24915 are separated by 63 nucleotides BWI76_RS24915 and BWI76_RS24920 overlap by 43 nucleotides BWI76_RS24920 and BWI76_RS24925 are separated by 22 nucleotides BWI76_RS24925 and BWI76_RS24930 are separated by 9 nucleotides
BWI76_RS24905: BWI76_RS24905 - filamentation induced by cAMP protein fic, at 5,189,505 to 5,190,506
_RS24905
BWI76_RS24910: BWI76_RS24910 - rRNA (cytidine-2'-O-)-methyltransferase, at 5,190,511 to 5,191,374
_RS24910
BWI76_RS24915: BWI76_RS24915 - penicillin-binding protein activator, at 5,191,438 to 5,193,519
_RS24915
BWI76_RS24920: BWI76_RS24920 - YraN family protein, at 5,193,477 to 5,193,863
_RS24920
BWI76_RS24925: BWI76_RS24925 - DnaA initiator-associating protein DiaA, at 5,193,886 to 5,194,476
_RS24925
BWI76_RS24930: BWI76_RS24930 - osmotically-inducible protein OsmY, at 5,194,486 to 5,195,061
_RS24930
Position (kb) 5191
5192
5193
5194 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5190.468 kb on + strand at 5190.481 kb on - strand at 5190.508 kb on + strand at 5190.517 kb on - strand at 5190.523 kb on - strand at 5190.536 kb on + strand at 5190.536 kb on + strand at 5190.536 kb on + strand at 5190.544 kb on - strand at 5190.544 kb on - strand at 5190.699 kb on - strand, within BWI76_RS24910 at 5190.911 kb on - strand, within BWI76_RS24910 at 5191.009 kb on + strand, within BWI76_RS24910 at 5191.010 kb on + strand, within BWI76_RS24910 at 5191.125 kb on - strand, within BWI76_RS24910 at 5191.125 kb on - strand, within BWI76_RS24910 at 5191.127 kb on + strand, within BWI76_RS24910 at 5191.135 kb on - strand, within BWI76_RS24910 at 5191.275 kb on + strand, within BWI76_RS24910 at 5191.283 kb on - strand, within BWI76_RS24910 at 5191.319 kb on - strand at 5191.336 kb on - strand at 5191.336 kb on - strand at 5191.721 kb on - strand, within BWI76_RS24915 at 5191.935 kb on - strand, within BWI76_RS24915 at 5191.978 kb on + strand, within BWI76_RS24915 at 5192.049 kb on - strand, within BWI76_RS24915 at 5192.064 kb on - strand, within BWI76_RS24915 at 5192.195 kb on - strand, within BWI76_RS24915 at 5192.334 kb on + strand, within BWI76_RS24915 at 5192.431 kb on + strand, within BWI76_RS24915 at 5192.563 kb on - strand, within BWI76_RS24915 at 5192.681 kb on - strand, within BWI76_RS24915 at 5192.703 kb on + strand, within BWI76_RS24915 at 5192.833 kb on + strand, within BWI76_RS24915 at 5193.028 kb on + strand, within BWI76_RS24915 at 5193.028 kb on + strand, within BWI76_RS24915 at 5193.028 kb on + strand, within BWI76_RS24915 at 5193.036 kb on - strand, within BWI76_RS24915 at 5193.040 kb on + strand, within BWI76_RS24915 at 5193.040 kb on + strand, within BWI76_RS24915 at 5193.041 kb on - strand, within BWI76_RS24915 at 5193.048 kb on - strand, within BWI76_RS24915 at 5193.158 kb on - strand, within BWI76_RS24915 at 5193.170 kb on + strand, within BWI76_RS24915 at 5193.170 kb on + strand, within BWI76_RS24915 at 5193.172 kb on + strand, within BWI76_RS24915 at 5193.207 kb on - strand, within BWI76_RS24915 at 5193.323 kb on + strand at 5193.408 kb on - strand at 5193.412 kb on + strand at 5193.445 kb on + strand at 5193.636 kb on + strand, within BWI76_RS24920 at 5193.745 kb on - strand, within BWI76_RS24920 at 5193.807 kb on + strand, within BWI76_RS24920 at 5194.007 kb on - strand, within BWI76_RS24925 at 5194.186 kb on + strand, within BWI76_RS24925 at 5194.314 kb on - strand, within BWI76_RS24925 at 5194.493 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 5,190,468 + -0.8 5,190,481 - +0.3 5,190,508 + -0.2 5,190,517 - +0.1 5,190,523 - -0.3 5,190,536 + -0.6 5,190,536 + -0.8 5,190,536 + -0.0 5,190,544 - -0.6 5,190,544 - -1.0 5,190,699 - BWI76_RS24910 0.22 -0.1 5,190,911 - BWI76_RS24910 0.46 +0.1 5,191,009 + BWI76_RS24910 0.58 -1.0 5,191,010 + BWI76_RS24910 0.58 +0.7 5,191,125 - BWI76_RS24910 0.71 -1.3 5,191,125 - BWI76_RS24910 0.71 -1.0 5,191,127 + BWI76_RS24910 0.71 -1.8 5,191,135 - BWI76_RS24910 0.72 -0.8 5,191,275 + BWI76_RS24910 0.88 -1.8 5,191,283 - BWI76_RS24910 0.89 +0.2 5,191,319 - -1.0 5,191,336 - -0.2 5,191,336 - +1.1 5,191,721 - BWI76_RS24915 0.14 +1.3 5,191,935 - BWI76_RS24915 0.24 +0.9 5,191,978 + BWI76_RS24915 0.26 +1.3 5,192,049 - BWI76_RS24915 0.29 +0.4 5,192,064 - BWI76_RS24915 0.30 +0.8 5,192,195 - BWI76_RS24915 0.36 +1.4 5,192,334 + BWI76_RS24915 0.43 -0.6 5,192,431 + BWI76_RS24915 0.48 +0.9 5,192,563 - BWI76_RS24915 0.54 +1.3 5,192,681 - BWI76_RS24915 0.60 +0.9 5,192,703 + BWI76_RS24915 0.61 +1.5 5,192,833 + BWI76_RS24915 0.67 +0.8 5,193,028 + BWI76_RS24915 0.76 +1.3 5,193,028 + BWI76_RS24915 0.76 +0.8 5,193,028 + BWI76_RS24915 0.76 +3.2 5,193,036 - BWI76_RS24915 0.77 +1.1 5,193,040 + BWI76_RS24915 0.77 +1.2 5,193,040 + BWI76_RS24915 0.77 +1.2 5,193,041 - BWI76_RS24915 0.77 +0.7 5,193,048 - BWI76_RS24915 0.77 +0.8 5,193,158 - BWI76_RS24915 0.83 +0.7 5,193,170 + BWI76_RS24915 0.83 +1.0 5,193,170 + BWI76_RS24915 0.83 +2.0 5,193,172 + BWI76_RS24915 0.83 +1.1 5,193,207 - BWI76_RS24915 0.85 +1.1 5,193,323 + +0.6 5,193,408 - +2.8 5,193,412 + +0.0 5,193,445 + +0.9 5,193,636 + BWI76_RS24920 0.41 -0.4 5,193,745 - BWI76_RS24920 0.69 -0.4 5,193,807 + BWI76_RS24920 0.85 -0.6 5,194,007 - BWI76_RS24925 0.20 -0.1 5,194,186 + BWI76_RS24925 0.51 -0.7 5,194,314 - BWI76_RS24925 0.72 +0.2 5,194,493 - -0.4
Or see this region's nucleotide sequence